KEGG   Arabidopsis lyrata (lyrate rockcress): 9311936
Entry
9311936           CDS       T01578                                 
Name
(RefSeq) putative DNA glycosylase At3g47830
  KO
K10773  endonuclease III [EC:3.2.2.- 4.2.99.18]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    9311936
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aly03400]
    9311936
Enzymes [BR:aly01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     9311936
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     9311936
 Prokaryotic type
     9311936
SSDB
Motif
Pfam: HhH-GPD USP47_C
Other DBs
NCBI-GeneID: 9311936
NCBI-ProteinID: XP_002875868
UniProt: D7LRF8
LinkDB
Position
Unknown
AA seq 294 aa
MSKAQKRKRLNQDDGESKTPAIKSTVDGSNPYPTLLRPTAEECREVRDALLSLHGFPPEF
ANYRRQRLRSLSAVDGHDTQCTMKSEPLDEAEEESVLDGLVKILLSQNTTESNSQRAFAS
LKAAFPNWEDVLAAESKSIESAIRCGGLAPKKAVCIKNILNRLQTERGVLCLEYLRGLSV
EEVKTELSHFKGIGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRNKTYVHL
NRRIPDELKFDLNCLLYTHGKLCSNCKKTVAKPKAKARVASPDECPLVGFSDLV
NT seq 885 nt   +upstreamnt  +downstreamnt
atgagtaaagcccagaaaaggaaacgcctaaaccaagacgacggcgaatcaaaaactccg
gccattaaatccaccgtcgacggcagcaatccttaccctacacttcttagacctaccgct
gaagagtgccgagaagtaagggatgctttgttgtctctccatggattccctccagaattc
gccaattaccgtcgtcagagactccgatcactctccgccgtcgatggtcacgatacacaa
tgtacgatgaaatctgagccattggatgaagcggaagaggagagtgtacttgatgggctg
gttaaaattcttctttctcagaacacaactgagagcaattcccaaagggcttttgcttct
cttaaagctgcatttccgaattgggaagatgttttggctgctgagtccaaatcaattgag
agtgctataagatgtggaggattggccccgaaaaaggcggtgtgtatcaagaatatattg
aaccgtttgcagaccgaaagaggagtactgtgtttggagtatctgcgtggtttatcggtc
gaagaagtaaaaactgagctctctcattttaaaggaataggacctaaaacggtttcttgt
gttctgatgttcaatctccagcacaatgatttcccggtagacacccatgtgtttgagatc
gcaaaggcgttaggttgggtccccaaaaccgcagacaggaacaaaacctacgttcatctc
aaccgcaggatcccggatgagctcaagtttgatctgaactgtctgttatatacgcatggt
aagctctgcagcaattgcaagaagactgttgctaaaccaaaagcaaaagctagagtggca
tctcctgatgaatgccctcttgtgggtttttctgatttagtttag

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