Arabidopsis lyrata (lyrate rockcress): 9325601
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Entry
9325601 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD16
KO
K15083
DNA repair protein RAD16
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aly03400
]
9325601
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
9325601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-RING_5
DEAD
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
Prok-RING_4
zf-C2HC_2
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
9325601
NCBI-ProteinID:
XP_020868136
LinkDB
All DBs
Position
Unknown
AA seq
885 aa
AA seq
DB search
MSCFPPLSTINKEWKNRTDHYFIKHNPKLXLFLLSSILRIRTEMELRSRNKAIPPSIEVV
DIEEETGTNSNDEPYAISSDDDDSIGSDFQGDEEEEEVEVEEVDANDDIPNPVPVLAPAP
LAIVNLPRASKKRKKACASKEKEKEVLMWEIWEKEQNRWIDEHMAEDVDLDQQNAVITET
AEPPPDLIMPLLRYQKEFLAWASKQEQSVAGGILADEMGMGKTIQAISLVLARREVDRAQ
FGEAVGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGVKREKNIKEFMNYDFVLTTY
STVESEYRRHIMPPRVQCAYCSKSFYPKKLLVHLRYFCGPSAVKTAKQSKQKRKKSTASS
SQQGKEADAGEDNKMKNTKKKTKQTVEEDQLGSDDREKSLLHSVKWNRIILDEAHYIKER
RSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQIRPYSYYFCKGCDCRILDYAA
HQSCPHCPHNLVRHFCWWNKYVAKPITVHGSFGLGKRAMILLKHKVLKDILLRRTKLGRA
ADLALPPRIISLRRDTLDVKESDYYESLYKNSQAEFNTYIEAGTLMHNYAHIFDLLTRLR
MAVDHPYLVVYSNSSGANANLVDENKNEQECGLCHDPAEDYVVTTCAHVFCKACLIGFST
SLGKVTCPTCSKLLTVDWTTKADTEHKASKTTLKGFRASSILNRIKLDDFQTSTKIEALR
EEIRFMVERDGSAKAIVFSQFTSFLDIINYTLGKCGVSCVQLVGSMTMAARDTAINKFKE
DPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFI
IENTVEERILRLQKKKELVFEGTVGGSQEAIGRLTEEDMRFLFTT
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtttcccgccgttatcgacaattaacaaagagtggaaaaacagaaccgaccac
tactttataaaacataaccctaaactcnatcttttcctattatcctcaattttgcgaatt
cggacagagatggagcttcggtcccgcaataaggcgattcctccatcgattgaagttgtg
gatatcgaggaagaaactggtaccaactctaatgacgaaccttatgctatatcttcagat
gatgacgattcaatcggctctgattttcaaggtgacgaggaggaggaggaggtggaggtc
gaggaggtcgatgctaatgatgatataccaaatcctgtacctgttcttgcccctgcgcct
ttggcaattgtaaacttaccaagagcaagcaagaaaagaaaaaaagcttgtgcaagcaaa
gagaaagagaaagaagtgctaatgtgggagatttgggaaaaagagcagaatagatggatt
gatgaacatatggcagaggatgttgatttggatcagcagaatgctgtgattaccgaaact
gctgagccgcctccagatttgattatgccgctattaaggtaccaaaaggaatttttggct
tgggcatcaaaacaggaacagtcagttgcaggagggattctcgcagatgagatgggaatg
ggaaaaacaatacaagccatctctcttgttcttgccagacgagaagttgacagggcacag
tttggggaagcagtggggtgcaccctggttctttgtcctcttgttgctgtttctcagtgg
ttaaatgagattgctcggtttacatccccgggaagcactaaggtccttgtataccatggg
gtgaagagagagaagaatattaaagagtttatgaactacgactttgttttgacaacatat
tccacagttgagagtgaatataggagacacattatgccgcccagggtgcaatgtgcatat
tgcagcaagtcattttacccgaagaaacttttggtccacctgcgatatttttgtggacct
tcggctgtcaaaacagcaaaacaatctaagcagaaaaggaaaaagtctacagcttcatcc
tcacagcaaggcaaggaggctgatgcaggagaggataacaaaatgaagaatactaagaag
aagaccaaacaaacagtagaagaagatcagttaggttcagatgacagagagaagtctctt
ttgcactctgttaagtggaatcggataattttggatgaggctcattacatcaaagaaaga
cgtagcaacacggcaagagctgtttttgctttggaggctacttatagatgggctctgagt
ggcactcctctccaaaatcgtgttggagagctttactccctgatccgcttcttgcaaatt
cgcccatactcatattacttttgcaagggttgtgactgtagaattcttgattacgctgcg
catcaaagctgccctcactgtcctcataatttagttcgacatttctgttggtggaacaag
tatgtggccaagccaataacagtacatggaagcttcggactaggaaagagagccatgata
ttgcttaaacataaagttctgaaggacatccttttaagacgtactaaattgggccgggca
gctgatcttgctcttcctcctagaattatctctctgaggcgggatacactagatgtaaag
gagtctgattactatgaatcactatacaaaaacagccaggcagaatttaatacgtatatt
gaggctgggacattgatgcataactacgcacatatatttgatcttctcacccgtctgaga
atggctgttgatcatccataccttgtggtgtattccaattctagtggcgctaatgctaac
ttggttgatgagaacaaaaatgagcaagaatgtggtctctgccacgacccggccgaggac
tacgttgtgactacttgtgcacatgtgttctgtaaagcttgcttgattggtttctctact
tccctgggaaaagtcacctgcccgacatgctcgaaactactgactgtggattggactacc
aaagctgacacagagcataaggcaagcaagacaacacttaaaggatttagagcctcaagc
attttaaatcggataaagcttgatgattttcagacaagtacaaagattgaggctttgagg
gaagaaattaggttcatggttgaaagagatgggtctgccaaagcaatagttttcagccag
ttcacatcatttttggatatcataaattatacccttgggaagtgtggggttagttgtgtt
caactggtgggaagcatgaccatggcagctagagatactgctatcaacaaattcaaagaa
gacccagattgcagagttttcttaatgagcttgaaagccggaggggttgctcttaattta
actgttgcttcacatgtttttatgatggacccgtggtggaacccagcggttgagaggcaa
gcacaagacagaattcataggatcggacagtacaagccaatcagggttgtgagattcatt
atagagaacacagtggaggaaaggattctaaggcttcagaaaaagaaggaacttgtgttt
gaagggacggttggtggctctcaggaggctataggaaggctgaccgaggaagatatgagg
tttctgtttacaacataa
DBGET
integrated database retrieval system
