Arabidopsis lyrata (lyrate rockcress): 9328011
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Entry
9328011 CDS
T01578
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9328011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9328011
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
9328011
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_5th
Ig_NUP210_2nd
Ig_NUP210_15th
Ig_NUP210_3rd
HL_N-beta
Ig_NUP210_16th
Motif
Other DBs
NCBI-GeneID:
9328011
NCBI-ProteinID:
XP_020868269
LinkDB
All DBs
Position
Unknown
AA seq
1700 aa
AA seq
DB search
MVRFSFCFFFLLLLLSAGEISSQLGSGPHITDVNILLPPKMKNPVDYRLQGSDGCFKWSW
DHHDILSVIPEFNSSSRCSTSARLRSISPYSGRKETAVYGTDIQTGMVIRCKVFIDNFSR
IQIFHNSIKLDLDGLSLLRVRAFDNEENEFSSLVGLQFMWKLMPESGGSTHHLAHVPLKE
SPLTDCGGLCGYLDIQKKLADSGVFADLFVVKGTKIGHEKVSVHLLEDPLTHISDEIVLT
VAEAMSLEPRSPVYVLMGASFGYTLKVMRENVPQAVHLPSPHHRWSVLNTSVAQVDSLIG
LTKGLSLGLTTVVVEDTRVAGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSM
HWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGKESHYWKIFSLPDELSSEYGQQ
NSRILNAMSPGLGELTATLTYFSGHQESKEVLKIVQEIMVCEKVQFTLNSKDDTPKILLP
WTPAVYQEMELIVTGGCAKASSDYKWFTSDMSIFSVSAYGIIQAKRPGIATVKVVSTFDS
QNFDEVIVEVSIPSSMVMLQNFPVETVVGSHLKAAVTMKASNGASFSRCDAFNSLIKWKT
GSDSFVIVNATSEMMMWDELRSMDSSPPCSRASIYTSSPGRTVLQATVAKEFHYFDKSLS
ESIDLKATLSIGAYLPLSVRQDSDGNHHGGYLFDKAQEETDFGVSKLYLVPGTYVDVMLL
GGPERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEFDRHANIYRISCQKLGSYKLVFLRG
YLVGMDHPVPAVAEALLSVHCSFPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVT
VANGQIIRVAAVGISEFGEAFSNSSTLSLRWELTSCNNLAYWDDDYNSKMTKSSWERFLA
LRNESGLCTVRATVSGIDYSYSTPLPQGSQSTLTDAVRLQLVSTLRVTPEFNLVFFNPNA
KVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGLGTTLVTVYDIGVSPRL
SALALIKVADVNWIKIASGDETSIMEGSSHSIDLLTGIDDGMTFDSSQYPLMDIMVHIED
DLVEHVTVDDNSLSVGEHVGTSSFKIAARRLGITTLYVSARQQSGDKVLSQTIKVEVYSP
PRLHPQGIFLVPGASYVLTVVGGPTMNVSVDYTTVDSEVAKVEKSGRLYATSPGNTTIYA
TIYGSEGTVVCQAIGNAEVGLPAAAMLVAQSDTVAVGHEMPTSPLFPEGDLLSFYELCSA
YKWTIEDEKVLIFIASSINVEENAAGFINVVQGRSAGKTRITIAFSCDFVSPGLYSESRT
YEASMILSVVPDLPLSLGAPMTWVLPPFYTSSGLLPSSLEPQKHRDGQSHRGNRVYSILK
DCSSPADFERDTISINGGSVKTTDSNNVACIQAKDRTSGRIEIAACVRVAEVAQIRMKSE
GIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVITYNAETNHRDVVYIKTVNDQPSAY
IKGIKHGKALIRVSIGGKNLRKSDYVLVSVGAHIFPQNPVIHTGNLLNFSIAGADHEVSG
QWVTSNRSVLSVNVASGQAKAISQGSTHGQSVEIDVSYETGESLVASSKDGYSFLFKILW
CVLVWAISGIISMKVIGSRIATNSGTAGPGTPERRSGAVIYHEESPRTPSPFMEYVKRTV
DETPYYRREGRRRFNPQNTM
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atggttcgtttctcgttctgcttcttctttctccttctcttgctatcggctggagaaatt
tcatcgcaattaggttctggtccacacattaccgatgttaacatactcttacctccgaag
atgaagaacccagttgattatcgccttcaaggaagtgatggctgcttcaaatggtcatgg
gatcatcatgacattctctcagttatacctgagtttaattcgagcagtcgttgctcaacc
agcgcgcgtctgagatcgatttctccgtatagtggtagaaaggagactgcagtttatggc
actgatatacagaccgggatggtgattcgctgcaaggtgtttattgacaacttctcacgg
attcagatttttcataattctatcaagcttgatcttgatggactttccttgcttagagtc
cgcgcttttgataatgaagaaaacgaattctcctcactggtgggtctacaattcatgtgg
aagctgatgcctgaaagtggtggatcaacgcatcaccttgctcatgtgcctttgaaggaa
tctccgttgactgactgtggaggactgtgtggctacttggatatccagaaaaagcttgca
gatagtggtgtatttgcagatttgtttgtcgtgaagggaaccaaaattggacatgagaag
gtttcagtacatctgcttgaggatcctctgacccatatatccgatgaaatagtactaacg
gtggcagaggccatgtctcttgaacctcgttcaccagtctatgtcctgatgggagcttct
tttggttacacgttaaaggtcatgcgtgaaaatgttcctcaagccgtgcatctaccatca
ccacatcatagatggtctgtgttgaacacttctgttgctcaagtggattctttgataggt
ctgactaaagggttaagcttggggttaacaactgttgttgttgaggatacccgggtcgct
ggccacattcaaggatcatctattaatgttgtcactccagatactcttatcttgtacata
tcaccttggtcaatgtcaggggatcttattacagaatcgaaaccttttccatcatctatg
cattggtatgtggtgtctggtcgtcaatatctaattcaaatgaagattttctctggaaga
cctgatgcacatgaaatctatataactgagacggatgacataaaactgtatggaaaagaa
tcacattattggaaaatcttctcactgccagatgaactttcctctgaatatggtcagcaa
aattctagaattttgaacgcaatgtcaccagggttaggagagctaacagctacattgact
tacttcagtgggcatcaggaatcaaaagaagttctcaaaattgtccaagaaattatggtt
tgtgagaaagtgcagttcacattgaacagtaaagatgacacacctaagattctactccct
tggacccctgctgtttatcaggagatggagctaattgttacaggaggttgtgcaaaagca
tcgagtgactacaagtggtttacttcagatatgagcattttttcggtgtcagcttatgga
attatccaggcaaagaggcctggaatagccactgtaaaggtggtgtcaacttttgattca
caaaattttgatgaggttatcgttgaagtttccattccatcctctatggttatgttgcaa
aacttcccagtagagacagttgttggatcacacctgaaagctgctgtcacaatgaaggct
tcaaatggtgcctcgttctctagatgtgatgcttttaattcattgataaagtggaagacg
gggagtgactcttttgttattgttaatgcgacatctgagatgatgatgtgggacgaacta
agaagcatggactccagccctccttgttcgcgggcttctatatatacttcatctcctggc
cgcacagtactccaagcaactgtggcaaaagagttccattattttgataagtcgttgagt
gaatcaatagatttgaaagcaactttaagtatcggggcctatctgccactttctgtcaga
caagatagcgacgggaatcatcacggtggatatttgtttgataaggcacaagaagaaact
gattttggtgttagtaagctatatcttgtacctgggacatatgttgacgttatgcttctg
gggggacctgaaaggtgggatgacaatgttgagttcaccgagactgtgaagacattgtat
gaagatgaggaggatcttacaagcagagttaacgtgcatcatgagtttgaccgccatgct
aacatatatagaatttcgtgccagaagcttggctcctataaactggtcttcttgcgtggg
tatctggtgggtatggaccatcctgtacctgcagttgcagaagctttattgtctgttcat
tgcagcttcccatcctctgttgtgctcattgttgatgaacctgttaacaagcttgatgtg
attagagctgctagtcaagctgacagggcaccaggacgacttcgtgtaactcctgtgact
gtggcaaatgggcagataattcgtgtggctgctgttggtattagcgagtttggagaagct
ttttcaaactcctcaactctttctctcaggtgggaactgaccagttgcaacaatttggca
tactgggacgatgattataactcaaaaatgacaaagtctagctgggagagatttctggct
cttcgcaacgaatcaggattgtgcactgtccgagccaccgtttctggtattgattattca
tactcaactccgcttccacaaggttctcaaagtactctcactgatgctgtacgcttacag
ttggtttccacactcagagtcacaccagagttcaacctggtctttttcaatcctaatgcc
aaggtaaatttgtcaatgactggagggagctgtttgtgggaagcagttgtgaataattct
cgtgtagcagaagttattcgacccccatctggcctgcaatgctcgcaaatgatgctatct
ccaaaagggttggggactacactcgtgacagtatacgacattggggtttctcctcgactt
tcagctcttgcgttgattaaagttgcagatgtgaactggataaagattgcatctggggat
gagacaagtataatggaaggaagttcacactccattgatctcttgactggcattgacgat
gggatgacctttgattcttcccagtacccacttatggacattatggtgcatattgaggat
gatctcgtggagcatgtcactgttgatgataattcactttcggtcggtgaacacgtggga
acttcctcttttaaaattgctgctagacgactgggaatcacaaccctatatgtcagcgca
agacaacaatcaggagataaagtacttagccaaactattaaagtcgaagtttattcccct
ccaagacttcacccacaaggaatatttcttgttcccggtgcttcttatgtgctcactgtt
gtaggaggcccgaccatgaatgtttctgttgactacaccactgtggatagcgaagtggca
aaggttgaaaaatcaggacgcctatacgcaacatcacccggcaacacgacaatctatgca
acgatttacgggagtgaaggtactgtagtttgtcaggcaattggcaatgctgaagtagga
cttcctgctgctgcgatgctggtggctcaaagtgacactgtggccgttggtcatgaaatg
cctacgtccccattatttcctgagggagaccttttgtctttttatgagctctgcagcgca
tacaagtggactattgaagatgagaaggtgttaattttcattgcatcatccatcaatgtg
gaagagaatgctgctggctttatcaatgtcgtccaaggaagatcagctggcaaaaccaga
atcacaattgccttctcatgtgatttcgtgtctcctggcttgtactctgaatctagaaca
tatgaagcgtcaatgattttatctgttgtgcctgatctccctctttcgcttggcgctcct
atgacttgggttcttccgcctttttatacatcatctggtctattaccttcatctctagag
ccacagaagcatagggatggccaaagtcacagaggcaatagagtctattccatattgaaa
gactgtagctctccggctgattttgaacgagataccatatcaattaatggtggaagtgtc
aaaacaacagatagcaacaatgttgcatgtattcaagccaaagaccgcacaagtggaagg
attgagattgctgcttgtgtgagggttgcagaggttgctcaaataagaatgaagagtgag
gggatccctttccacgtgatagatcttgctgtcggcggtgaacttgaacttccaataaat
tactatgacactttaggaatcccttttctcgaagcacatggtgttattacatacaatgcc
gaaactaatcatcgggatgttgtgtatattaagactgtcaatgaccaaccaagtgcctac
attaagggaataaaacatggcaaagctctcattcgggtttccattggcggcaaaaatctc
aggaaatcagactacgttctggtttcagttggggcgcatatctttcctcaaaacccggtc
attcacactggaaatttgttaaatttcagcatagcaggggctgatcatgaagtctctggt
caatgggttacatcaaacagaagtgtcctatccgtcaatgtggcatctggccaagctaaa
gcgatcagccaaggctcaactcatggccaaagtgtagaaattgatgtctcctatgagacg
ggcgagtccctagtagcttcgtctaaagatggatactcttttttgttcaagatactatgg
tgcgttttggtgtgggctatatcagggatcatctcgatgaaagtgatagggtctagaatt
gcaacaaacagtggaactgcaggaccgggaacaccagaaagaagaagcggtgcagtaata
taccatgaggaatctccaagaacaccatcaccgtttatggagtatgtgaagagaacagtg
gatgaaactccctattacagaagagaaggaagaagaaggtttaatcctcaaaacactatg
tag
DBGET
integrated database retrieval system
