Alteromonas mediterranea DE1: amad1_10190
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Entry
amad1_10190 CDS
T02340
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03030
DNA replication
amaa03410
Base excision repair
amaa03420
Nucleotide excision repair
amaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
amad1_10190
03410 Base excision repair
amad1_10190
03420 Nucleotide excision repair
amad1_10190
03430 Mismatch repair
amad1_10190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amaa03032
]
amad1_10190
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_10190
Enzymes [BR:
amaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
amad1_10190
DNA replication proteins [BR:
amaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
amad1_10190
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
amad1_10190
NER (nucleotide excision repair)
GGR (global genome repair) factors
amad1_10190
MMR (mismatch excision repair)
DNA ligase
amad1_10190
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
amad1_10190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AFV85545
LinkDB
All DBs
Position
2260770..2262806
Genome browser
AA seq
678 aa
AA seq
DB search
MSDTLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSLQSPN
SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDTSSLHFSCEPKL
DGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLRLRGDAHPDRVEVRGEVFM
PREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPDNFT
LPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDNLPYDIDGVVFKVNRI
DLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEITRLGVKVGDTVVIRRAGDVIPQVVSVVDTKRTGSENDIAFPSQCPVCGSQ
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADF
FTLSLGDVVGLERMAEKSASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFET
LDAIRDASIEALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNL
PLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELD
VEVWDEAKLIAFLAENEK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacactttagaacaagctcgaaaaaaagttgccgaactgcgcaacaccttaaac
gaatataactaccagtattatgtattggacgatccctcaatacccgacgcggtatacgat
agggatatgcagtcacttattgcgcttgaaaaacagtatccttctttacaaagccctaat
tccccaagtcaaaaagtggggggggaggcattatcggcatttgagcaagtcacccacgat
gtgcctatgctttcgcttgataatgctttcgatgaggaatctcttcttgcttttgaaaag
cgtctcaaggatagattaaaagacacatcaagtttgcatttcagttgcgagcctaagtta
gatggccttgccgtaagtatcctttatgagaatggtgaacttgttcgtgcggccacacga
ggtgatggtcaagtcggtgagaatattacggcgaatgtacgcactatttctaacgtgccg
ttaaggttgcgcggagacgctcaccccgatcgcgtagaagttcgcggtgaagtattcatg
cctcgcgagggctttgctaagttaaacgaacatcagaaaaacgccggtggtaaggtgttt
gccaatccacggaatgccgcagcgggaagtttacgtcagcttgattcaaaaataaccgct
aaacgcccgttgatgttttatgcatactcgctgggcgtagtacaacctgataactttacg
ctacctaccacccatagcgaacgcctctcacaattaggtaaatgggggctgcccttgtgc
cccgatattgatacagctgaaggtgggcgaggctgtctcgattactatcatcatatatta
gaaaagcgtgacaacttaccttacgacatagacggcgttgtctttaaagttaaccgtatt
gatttacaggctgcgctagggtttgtagcacgtgcgccaaggtgggcaattgcacaaaag
tttcctgcccaagaagaagtgactaaactgcttgatgtagagtttcaggttggccgtacc
ggtgcaattacccctgtcgcaaggcttgagcccgtttttgtaggcggtgtaaccgtgtca
aatgcgaccttgcacaaccaagatgagattactcgtttaggcgttaaagtgggtgacact
gtggttatccgtcgtgcaggtgatgttattccgcaggtggtgtctgtggttgatacaaaa
cgtacaggcagcgaaaacgacatagcttttcccagtcagtgccctgtgtgcggctcacaa
gtagaaaagcttgaagatgaggcagttgctcgttgtacgggtgggttaatctgtgcagcg
cagcgcaaacaagcgcttaaacattttgcttctcgaaaggcatttgatattgacggttta
ggggacaaattggtcgatcagctagttgatgccgatttagttcatagccctgctgacttc
tttactctatcacttggtgatgtggttggtttagagcgcatggctgaaaaatcagcgagt
aagttgttatcctctttagaggcatctaaacaaactaccttagcgaagtttctatacgca
cttggtattcgagaagtaggggaagcgacagcagctaatttagcggcgcactttgaaacc
ctcgatgcaattcgcgacgcgtcgatagaggcgctggttgaagtacaggatgtgggcgag
atagtagcaacacatatatttaacttctttaatgagtcacacaatactgatgtgattgat
gcgttgttaaaagaaggcattaactggcctgcgattgaaaaacctgacgcggataactta
ccgcttgagggtaaaacctgtgtgatcaccggaacgcttagcgaaatgggccgctcggat
gctaaagcgcgcttacaactcttaggggctaaagtggcgggttcggtaagtaaaaatacc
gattttctggttgctggagaaaaggcaggctctaaattgacgaaggcccaagagttagac
gttgaggtgtgggatgaagccaaacttattgcttttctcgcagaaaatgagaaatga
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