Alteromonas macleodii ATCC 27126: MASE_08985
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Entry
MASE_08985 CDS
T02246
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amac
Alteromonas macleodii ATCC 27126
Pathway
amac03030
DNA replication
amac03410
Base excision repair
amac03420
Nucleotide excision repair
amac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MASE_08985
03410 Base excision repair
MASE_08985
03420 Nucleotide excision repair
MASE_08985
03430 Mismatch repair
MASE_08985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amac03032
]
MASE_08985
03400 DNA repair and recombination proteins [BR:
amac03400
]
MASE_08985
Enzymes [BR:
amac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MASE_08985
DNA replication proteins [BR:
amac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MASE_08985
DNA repair and recombination proteins [BR:
amac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MASE_08985
NER (nucleotide excision repair)
GGR (global genome repair) factors
MASE_08985
MMR (mismatch excision repair)
DNA ligase
MASE_08985
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MASE_08985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AFS37328
LinkDB
All DBs
Position
2101265..2103301
Genome browser
AA seq
678 aa
AA seq
DB search
MSDSLEQAKQQIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTLQSPN
SPSQKVGGAALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDSATLDFSCEPKL
DGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLTLRGEHYPERVEVRGEVFM
PREGFAKLNEHQKETGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFE
LPTTHSERLKQLGNWGLPLCPDIDTAEGGKGCLAYYNHILEKRDSLPYDIDGVVFKVNRI
DLQDALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEISRLGVKVGDTVVIRRAGDVIPQVVSVVEANRTGSETDITFPSQCPVCDSQ
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADF
FTLSLGDVVGLERMAEKSASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAAHFET
LEAIREASLEALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDSDNL
PLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELD
VEVWDEAALIAFLSEHEK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattctttagaacaagcaaagcaacaaatagaaacacttcgcaacacacttaat
gagtacaactatcagtactatgtgatggatgacccttcggttcctgatgcagtatatgat
agagatatgcaggcgcttattgcgctagaaaaacaatatcctacgcttcaaagtccgaat
tctcctagccaaaaagtgggaggtgcagcgttatcggcttttgaacaagttacccatgat
gttcctatgctgtcgctggataacgcctttgacgaagaatcattgcttgccttcgaaaaa
cgtttaaaagacagactaaaagattcggcaacgttagattttagctgcgaacccaagcta
gatggtttagcggtaagtattctgtatgaaaatggcgaattagtgcgtgctgcaacccgt
ggtgacggccaggtaggcgaaaatatcacggctaacgtgcgtaccatttctaatgtgccg
ttaacgcttcgtggtgagcattatcctgagcgcgtagaagtgcgcggtgaagtgtttatg
cctcgtgagggctttgcaaaactcaacgaacatcaaaaagaaacgggtggtaaggttttt
gcgaaccctcgtaatgctgcggctggcagtttacgacagttagactctaaaattacggcc
aagcgcccgctgatgttttatgcctactcgctaggcgtagtgcaacctgaaagttttgaa
ttacccacaacacacagcgagcgccttaagcaattaggtaattgggggctgccgctgtgc
cctgatatcgacaccgccgagggcggtaaaggctgcttggcatactacaaccacattttg
gaaaagcgcgatagtttgccgtatgacattgacggcgttgtgtttaaggttaaccgtatt
gacctgcaagatgcccttggatttgtggctcgagcgccacgctgggcgattgcgcagaag
tttcctgcacaagaagaagtgactaagttactggacgttgagtttcaggtaggaaggact
ggtgcgatcacgccggttgctcgtttagagcccgtgtttgtaggtggagtaactgtgtcg
aatgctacacttcacaatcaggacgaaatttccagattaggcgttaaagttggcgacacc
gtggtaatccgccgtgcgggtgacgttattcctcaggtggtgtctgtggtagaagctaat
cgcacaggtagcgaaactgacattaccttcccaagccaatgcccagtgtgtgactcgcag
gttgagaaactagaagacgaagcggttgcccgttgcaccggtgggttaatttgtgccgca
caacgcaaacaggcgcttaagcattttgcttcgcgtaaagcattcgatattgatggtctg
ggcgacaagttagtcgatcagttagttgacgctgatcttgtgcacagtcccgccgacttt
ttcacgctttcgttaggcgacgttgttgggctagagcgcatggctgaaaagtctgccagt
aagctactggcatcgcttgaagcttcaaagcaaaccacgcttgccaagttcctatacgca
ttggggatccgtgaggttggcgaagctactgcggcaaacttggctgcgcacttcgaaacc
ttggaggctattcgcgaggcgtcgcttgaagcactggttgaagtccaagacgttggtgaa
gtggtggctacccacattttcaatttctttaacgagtcacacaatactgatgttattgat
gcgctgttaaaagaaggaattaactggcctgctattgaaaagcctgattcggataacttg
cctcttgaaggaaaaacgtgcgttattaccggtacactcagtgaaatggggcgttctgac
gcgaaagcacgtttgcagttacttggtgcaaaagtggcaggctcggtaagtaagaatacc
gacttcctagttgcaggagaaaaagcgggttccaaattaactaaagcacaagaactagat
gttgaggtatgggacgaagctgcgcttatcgcttttttatcggagcatgaaaagtag
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