Acetobacterium malicum subsp. dehalogenans: ACIUZZ_01485
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Entry
ACIUZZ_01485 CDS
T11223
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amaj Acetobacterium malicum subsp. dehalogenans
Pathway
amaj03030
DNA replication
amaj03410
Base excision repair
amaj03420
Nucleotide excision repair
amaj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACIUZZ_01485 (ligA)
03410 Base excision repair
ACIUZZ_01485 (ligA)
03420 Nucleotide excision repair
ACIUZZ_01485 (ligA)
03430 Mismatch repair
ACIUZZ_01485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amaj03032
]
ACIUZZ_01485 (ligA)
03400 DNA repair and recombination proteins [BR:
amaj03400
]
ACIUZZ_01485 (ligA)
Enzymes [BR:
amaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACIUZZ_01485 (ligA)
DNA replication proteins [BR:
amaj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACIUZZ_01485 (ligA)
DNA repair and recombination proteins [BR:
amaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACIUZZ_01485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACIUZZ_01485 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACIUZZ_01485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACIUZZ_01485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XOB58737
LinkDB
All DBs
Position
320566..322557
Genome browser
AA seq
663 aa
AA seq
DB search
MSETRIEALRKKIAAYNRAYYLDDAPLVSDYDYDQLMQELIVLETENPEMITPDSPTQRV
GGSPSEGFDKVLYSRPKLSLSNAFDAGDLRDFDRRVRQTCPVATYVVEYKFDGLTVVLNY
ENGIFVQGATRGDGEVGENVTTNLKTIRTIPLRLSEPVTLEVRGEVFMGKVDFEKLNQRR
LADEESPFANPRNAAAGSLRQLDPRITASRPLDIFVFNLESAADFESQTHTETLDYLRTL
GFKTSAVKAFSDIEAIIDYCSLMEVERRNLPFEIDGLVIKVDELSCRELLGNTSKSPRWA
MAYKFAPDQAITTVTAITVQVGRTGALTPVAELSPVPLAGSVIARATLHNEDNIRAKDIR
IGDHVMIQKAGDVIPEVDHVVFEKRSGNEVVFQMPKRCPVCDEPTFRIDGEAVTKCLNMA
CPAQVFRKLVHFTSRDAMNIEGLGPGVLRLLMDEKLVINPVDIYHLDQKREQLVTLEKLG
EKSVDNLLAGIEASKERELSRLIFGLGIPLVGARGAKILAEHYQKMDNLILAQVEDLKEI
FEIGEKMATEIVDFFQTPTNIEIIRGLEVAGLNMIQETHLASQALAGKTFVLTGTLPTLD
RREAKALIEANGGKVAGSVSKKTDFLLSGEKSGSKYEKAQSLGIAIIDEEAFLALVRGGG
FDL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagactcgaattgaagcgttaaggaaaaaaatagccgcatataacagagcctac
tatcttgatgacgcgcccctggtttcggactatgattatgatcagttgatgcaggaactg
attgtactggaaaccgaaaatccggagatgatcaccccggattccccgacccagcgggtt
ggcggaagcccttcagagggctttgacaaggtgctttacagtcgtcccaagctgagcctc
agcaatgcttttgatgcgggtgatctccgggattttgaccgccgggtgcggcaaacctgt
cccgtggccacctatgtggtggaatataagtttgatggcttaacggtggtgcttaactac
gaaaatggtatatttgtccagggcgcgacccggggcgatggggaagtgggggagaatgtt
accaccaaccttaaaaccatccgaaccatcccactgcgtctttcagaaccggtaaccctg
gaagttcggggcgaagtgtttatgggcaaagtcgatttcgaaaaactgaatcagcggcgt
ctggccgatgaggaaagccctttcgccaaccccagaaatgcggctgccggatccttgcgg
caattggaccccaggataacggcctcccggccactggatatttttgtcttcaatctggaa
tcagcagcagattttgaatcccaaacgcacacggagacgctggattatttaagaaccctg
ggttttaaaaccagtgcggttaaggcctttagtgatatcgaagcgatcattgactactgc
agcctgatggaagtggaaagacgcaatctgccctttgaaattgacggtctggtaattaag
gtggatgaattatcctgtcgggagttgctggggaatacctcaaaaagcccccgctgggcg
atggcctataagtttgccccggatcaggcgattaccactgttactgccattaccgttcag
gtgggccgaaccggtgccctgactccggtggccgaactgtcgccggtaccactggccggg
tcggtgatcgctcgggcaacccttcataatgaagataatatccgtgccaaggatatccgc
atcggcgaccatgtaatgattcagaaggctggcgatgtgattccagaagtggatcatgtg
gtgtttgaaaagcgatcgggaaacgaggttgtttttcaaatgccaaaacgctgtccggtt
tgtgatgaaccgacctttcggattgacggggaggcggtgaccaaatgtctgaatatggcc
tgcccggcccaggtgttccgcaaactggtgcactttacgtcccgggatgcgatgaatata
gagggactgggtccaggcgtgctgcggctgttgatggacgaaaagctggtgattaacccg
gtggacatctatcatttggatcaaaaaagagaacagctggtcacccttgaaaagttgggc
gaaaaatcggtggacaatcttttagccgggatcgaagcctctaaagaacgggaattatcg
cggctgatttttggcttgggtattccgctggtaggcgccagaggggcgaaaattctggcc
gagcattatcagaaaatggataacctgatcctggctcaggtggaagatctcaaagaaatc
ttcgaaattggtgaaaaaatggctaccgaaattgtggattttttccagacccccaccaat
atcgaaatcatcagaggtctggaagtggcggggctgaatatgattcaggaaacccacttg
gcgtctcaggctctggctggtaagacctttgttctcaccggtactctgcccactctcgac
cgacgggaagctaaagccctgattgaagccaatggtggtaaggtagctggcagtgtcagc
aaaaaaaccgattttctcctatccggggaaaagtccgggtccaaatatgaaaaagcccag
tcgttaggaattgcaataattgatgaagaggcttttttagcccttgtcaggggtggtggg
tttgatttataa
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