Agromyces marinus: DSM26151_02580
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Entry
DSM26151_02580 CDS
T08161
Symbol
yodJ
Name
(GenBank) Putative carboxypeptidase YodJ
KO
K07260
zinc D-Ala-D-Ala carboxypeptidase [EC:
3.4.17.14
]
Organism
amau
Agromyces marinus
Pathway
amau00550
Peptidoglycan biosynthesis
amau01100
Metabolic pathways
amau01502
Vancomycin resistance
amau02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
amau00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DSM26151_02580 (yodJ)
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DSM26151_02580 (yodJ)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
DSM26151_02580 (yodJ)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
amau01002
]
DSM26151_02580 (yodJ)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
amau01011
]
DSM26151_02580 (yodJ)
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
amau01504
]
DSM26151_02580 (yodJ)
Enzymes [BR:
amau01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.17 Metallocarboxypeptidases
3.4.17.14 zinc D-Ala-D-Ala carboxypeptidase
DSM26151_02580 (yodJ)
Peptidases and inhibitors [BR:
amau01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
DSM26151_02580 (yodJ)
Peptidoglycan biosynthesis and degradation proteins [BR:
amau01011
]
Peptidoglycan biosynthesis and degradation
Carboxypeptidase
DSM26151_02580 (yodJ)
Antimicrobial resistance genes [BR:
amau01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
DSM26151_02580 (yodJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VanY
TALPID3
DNA_processg_A
DEC-1_N
Motif
Other DBs
NCBI-ProteinID:
UIP57403
LinkDB
All DBs
Position
269246..270046
Genome browser
AA seq
266 aa
AA seq
DB search
MATRPGPSPRVRRNRLIAGLVVAMLVVVASAWVIAALAPSAGSASPSPSPSATPTATPRP
APTATATPTPVDTFDKAAHSIDDPDSIWVVVDKLRPLNPADYEPSDLVVVPVAHTWEPLM
RAEAADAIVRMFQAAADEAGLSLASNSAYRSYGSQERIYDGDDTLTARPGFSEHQTGLTM
DIGAESGYCSLDVCLADTAEGQWLRDNAHRFGFLLRYPADKVDVTGYQFEPWHFRYIGTE
LALEMREKGITTLEEFFGLPPAPNYE
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaggccgggaccctctccacgcgtacgccggaaccgcctgatcgcaggcctc
gtcgtcgcgatgctcgtcgtcgtcgcgtcggcctgggtgatcgcggcgctggccccatcg
gccggttccgcgagcccgtccccctcgccgtcggcgacgcccaccgcgacgccgcgcccg
gcacccacggccacggcgactccgacgcccgtcgacacgttcgacaaggcggcgcactcg
atcgacgacccggacagcatctgggtcgtcgtcgacaagctccgacccctgaacccggcc
gactacgagccctccgacctcgtcgtcgtaccggtcgcgcacacgtgggagccgctcatg
cgcgccgaggcggccgatgcgatcgtccggatgttccaggcggccgccgacgaggcgggg
ctctcgctggcgtcgaacagcgcctaccggtcctacggttcgcaggagcgcatctacgac
ggtgacgacacgctcacggcccgtcccggattcagcgagcaccagacgggcctcacgatg
gacatcggcgcggagtcggggtactgctccctcgacgtgtgcctcgccgacaccgcagag
gggcagtggctgcgcgacaacgcccaccggttcgggttcctgctgcggtacccggcggat
aaggtcgacgtgaccgggtaccagttcgaaccgtggcacttccgctacatcggcacggaa
ctcgcgctcgagatgcgcgagaagggcatcacgacgctcgaggagttcttcggtcttccg
ccggctccgaactacgagtga
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