Agromyces marinus: DSM26151_17320
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Entry
DSM26151_17320 CDS
T08161
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amau
Agromyces marinus
Pathway
amau03030
DNA replication
amau03410
Base excision repair
amau03420
Nucleotide excision repair
amau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM26151_17320 (ligA)
03410 Base excision repair
DSM26151_17320 (ligA)
03420 Nucleotide excision repair
DSM26151_17320 (ligA)
03430 Mismatch repair
DSM26151_17320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amau03032
]
DSM26151_17320 (ligA)
03400 DNA repair and recombination proteins [BR:
amau03400
]
DSM26151_17320 (ligA)
Enzymes [BR:
amau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSM26151_17320 (ligA)
DNA replication proteins [BR:
amau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM26151_17320 (ligA)
DNA repair and recombination proteins [BR:
amau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSM26151_17320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM26151_17320 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSM26151_17320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM26151_17320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UIP58843
LinkDB
All DBs
Position
complement(1851931..1854291)
Genome browser
AA seq
786 aa
AA seq
DB search
MSETTAASGIPTDLESMDFESARAEADRLAERIDAARRAYYGDGDSPLSDAEYDEAFHRL
EALERAFPELAGQDSPTQQVGAEVASAGFPEHEHAERMLSLDNVFSEAEFREWAAKAEAS
AGRPVRWLTELKIDGLAISLAYRDGVLETATTRGDGRVGENITENLEFIPAIPTRLSGEG
FPPFFEVRGEVFLSTADFAALNARQRELQADHEAAELAKGRDPEKITTRYPEFANARNTA
AGSLRQRRENKSALDLELMRDRLGRLAVYLHGIGAWNEPPVAAQSEIYDLIAGWGLPVSP
HSHVFDSVDDVAAFIAHWGEHRHDIEHEIDGIVIKVDDLALHDELGATSRAPRWAIAYKY
PPEEVHTKLLDIVVGVGRTGRATPYAVMEPVKVAGSTVRQATLHNQQVVKAKGVLIGDTV
VLRKAGDVIPEILGAVESARDGTQTEWRMPETCPECGTPLRAMKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGGLDIEALGEVSAAALTHPLRPETPPLVTEAGLFDLRLDDLLPIEVVV
RDMETGLEKLEDDGTVRVRAPFQRVTKEYPPEAAGLDAAERRKAGFKKDFVVVHPSAAAN
KLLAELDKAKTKPLWRLIVSLNIRHVGPVAARALADHFGSLDAIRAATRDELAEVDGVGG
IIADSLIDWFEVDWHQEIVDRWQNAGVQWATPRHPGPGRAAAADGVLAGLTIVATGSLEG
YTRDGAQEAIIAAGGKAASSVSKKTDYVAAGPGAGSKLAKAEALGIRVLDAAQFRVLVTE
GPDALG
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagacgactgctgcgagcggcatccccaccgatctcgaatcgatggacttcgag
tccgcgcgagccgaggccgaccggctggccgaacgcatcgacgccgctcggcgggcgtac
tacggcgatggcgattcgccgctctccgacgcggagtacgacgaggcgttccaccgcctc
gaggcgctcgagcgcgcgttcccagagctcgccgggcaagacagcccgacccagcaggtg
ggtgccgaggtggcatccgccgggttccccgagcacgagcatgccgagcggatgctgagc
ctcgacaatgtcttctccgaagcggagttccgcgagtgggctgcgaaggccgaggcatcg
gccggccggccggtgcgctggctcacggaactgaagatcgacgggctcgcgatcagcctc
gcgtaccgcgacggcgtgctcgagaccgcgacgacccgaggcgacgggcgggtcggcgag
aacatcaccgagaacctcgagttcatccccgccatcccgacccgactcagcggagaaggg
ttccctccgttcttcgaggtccggggcgaagtcttcctcagtaccgccgacttcgccgcg
ctcaacgcgcgccagcgcgaactccaggccgaccacgaggcggccgaactcgccaagggc
agagaccccgagaagatcacgacccggtaccccgagttcgccaacgcccgcaacaccgcc
gccggaagccttcgccagcgacgtgagaacaagagcgccctcgacctcgaactcatgcga
gaccggctcggccgcctcgccgtatacctgcacggcatcggcgcctggaatgagccgccc
gtggcggcgcagtccgagatctacgacctcatcgccgggtggggcctgcccgtctcgccg
cactcgcacgtgttcgactcggtcgacgacgtcgccgcgttcatcgcgcactggggcgag
caccggcacgacatcgagcacgagatcgacggcatcgtcatcaaggtcgacgacctcgcc
ctgcacgacgaactcggcgcgaccagccgcgcaccgcgctgggcgatcgcctacaagtac
ccgcccgaagaggtgcacacgaagctgctcgacatcgtcgtcggcgtcggccggaccggg
cgggccaccccctacgccgtcatggaaccggtcaaggtcgccggctccaccgtgcggcag
gcgaccctgcacaatcagcaggtcgtgaaggccaagggcgtgctcatcggcgacacggtc
gttctccgcaaggccggcgacgtgattcccgagatcctcggcgcggtcgagtccgcccgc
gacggcacccagaccgaatggcgcatgcccgagacttgccccgagtgcggcacccccttg
cgcgccatgaaagagggcgacatcgacctgcgctgccccaacgcgcggtcctgcccggcg
caggtgcgcggccgcgtcgaacacatcggctcgcgcggcgggctcgacatcgaagcgctc
ggcgaggtctcggccgccgcgctcacccaccccctccggccagagaccccaccgctcgtc
acggaggccggcctattcgacctccgcctcgacgacctgctgcccatcgaagtcgtcgtg
cgcgacatggagaccgggctcgagaagctcgaagacgacggaaccgtgcgcgtacgcgcg
ccgttccagcgcgtcaccaaggagtacccgcccgaggccgccgggctcgacgcggccgag
cgccgcaaggccggcttcaagaaggacttcgtcgtcgtgcacccgtcggccgcggcgaac
aagctcctcgccgaactcgacaaggccaagaccaagccgctgtggcgcctcatcgtctcc
ctcaacatccggcacgtcgggcccgtcgcggcacgcgcactcgccgaccacttcggctcg
ctcgacgcgatccgtgcggcgacccgggacgaactcgccgaggtcgacggcgtcggcggc
atcatcgccgactcgctcatcgactggttcgaggtcgactggcaccaggagatcgtggac
cggtggcagaacgcgggcgtgcagtgggcgaccccgagacaccccgggccgggcagggct
gcagccgccgacggcgtgctcgccgggctcacgatcgtcgcgaccggatccctcgagggc
tatacgcgcgacggcgcccaggaggccatcatcgccgcgggcggcaaggccgcctcgagc
gtgtcgaagaagaccgactacgtcgcggccggccccggcgccggatccaagctcgccaag
gccgaagccctcggcatccgcgtgctcgacgccgcgcagttccgggtgctcgtgaccgag
ggccccgacgcgctcgggtga
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