Agromyces mangrovi: GCM10025877_27790
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Entry
GCM10025877_27790 CDS
T09181
Symbol
kgd
Name
(GenBank) alpha-ketoglutarate decarboxylase
KO
K01616
multifunctional 2-oxoglutarate metabolism enzyme [EC:
2.2.1.5
4.1.1.71
1.2.4.2
2.3.1.61
]
Organism
amav
Agromyces mangrovi
Pathway
amav00020
Citrate cycle (TCA cycle)
amav00630
Glyoxylate and dicarboxylate metabolism
amav00785
Lipoic acid metabolism
amav01100
Metabolic pathways
amav01110
Biosynthesis of secondary metabolites
amav01120
Microbial metabolism in diverse environments
amav01200
Carbon metabolism
amav01210
2-Oxocarboxylic acid metabolism
Module
amav_M00009
Citrate cycle (TCA cycle, Krebs cycle)
amav_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
amav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
GCM10025877_27790 (kgd)
00630 Glyoxylate and dicarboxylate metabolism
GCM10025877_27790 (kgd)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
GCM10025877_27790 (kgd)
Enzymes [BR:
amav01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
GCM10025877_27790 (kgd)
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.5 2-hydroxy-3-oxoadipate synthase
GCM10025877_27790 (kgd)
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.61 dihydrolipoyllysine-residue succinyltransferase
GCM10025877_27790 (kgd)
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.71 2-oxoglutarate decarboxylase
GCM10025877_27790 (kgd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
E1_dh
2-oxoacid_dh
Transket_pyr
OxoGdeHyase_C
2-oxogl_dehyd_N
SHOCT
DUF3857
Motif
Other DBs
NCBI-ProteinID:
BDZ65841
LinkDB
All DBs
Position
complement(2902298..2906062)
Genome browser
AA seq
1254 aa
AA seq
DB search
MSRQLTGGSDQATSNEFGANEWLVDELYEQFRADRDSVDKTWWPILENYRPASGDAPATP
ATPAQAPVADPAPPAAASPAVPAPSAHPVTAPTPVIGAQPQARTTARAPRPEPVPADVPV
TSPQPVVEGETEKVDEVVPLRGLPKTLAANMDQSLTVPTATSVRTVPAKLMIDNRIVINN
HLRRARGGKVSFTHLIGWALIQALKEFPSQNVYYDERDGKPSLIKPAHIGLGIAIDLPKP
DGTRALLVPAIKRAETMTFNEYLAAYEDLVQRARKNKLTADDFKGATISLTNPGGIGTVH
SVPRLMKGQGCIIGAGALEYPAEFQGSSDRTLANLAIGKTITLTSTYDHRVIQGAGSGEF
LKTVHELLIGQRRFYEDIFAALRLPYDPIHWAPDISVDIASAIDKTARVQELINSFRVRG
HMMADIDPLEYVQRSHPDLDIASHGLTFWDLDREFVTGEFGESRTSLLRDILGVLRDSYC
RTIGIEYMHIQDPEQRKWIQGKVERKYEKPTHDEQMRILGKLNEAEAFETFLQTKYVGQK
RFSLEGGESMIALLDEVLQGAAKEGLDEVAIGMAHRGRLNVLTNIAGKTYGQIFREFEGA
PDPRTVSGSGDVKYHLGTEGVFTADTGEEVPVYLAANPSHLEAVNGVLEGIVRAKQDRRP
AGSYGTLPILVHGDAAMAGQGVVFETLQMSQLRGYRTGGTIHVVANNQVGFTTVPGDARS
SIYSTDVAKTIQAPIFHVNGDDPEAVVRVAELAFEYRQQFHRDVVIDLVCYRRRGHNEGD
DPSMTQPLMYNLIEAKRSVRKLYTEALVGRGDITEEEYQAAHRDFQERLEHAFQETHAAQ
TASSAPGGAADIEPATSAPLTKEAPPTGELETTGVSDQVVHMIGDAFNNKPDGFTVHAKL
QQLLQKRLDMSRNGKIDWAFGELLALGSLLVEGTPVRFAGQDARRGTFVQRHSVFHDRVN
GQEWLPLLNLSDNQARFWIYDSLLSEYAAMAFEYGYSVERKDALVLWEAQFGDFANGAQT
VIDEFISSAEQKWGQRSSVVLLLPHGYEGQGPDHSSARIERYLQMCAEQNMTVARPSTPA
SYFHLLRRQAYQRPRRPLVVFTPKAMLRLRGATSEVADFTSGKFEPVIDDARITDRAAVR
RVVFMAGKLYYDLAAELAKHPNPEIALVRLEQYYPLPAERLAEVADSYPNAELVWAQDEP
ENQGAWPFFAIETGKIWDRPVSVVSRAASASPATGSAKVHAQEQTELVSRALSL
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaggcagttgaccggtggatccgaccaggccacgtcgaacgagttcggcgcgaac
gagtggctcgtcgacgaattgtacgagcagttccgcgccgaccgtgactcggtcgacaag
acgtggtggccgatcctcgagaactaccgtcccgcgtcgggcgacgcgcccgccacgccc
gccacgcccgcgcaggcacccgtggcggacccggctccgccggcggccgcctcccccgcc
gtgcccgcaccctcggcccaccccgtcacggcgcccacgcccgtgatcggcgcccagccg
caggcgcgcaccaccgcccgcgcgccgcgccccgagccggtgcccgccgacgtgccggtc
acgagcccgcagccggtcgtcgagggcgagaccgagaaggtcgacgaggtcgtcccgctc
cgcggcctgccgaagaccctcgcggcgaacatggaccagagcctgacggtcccgaccgcg
accagcgtgcgcacggtgcccgcgaagctgatgatcgacaaccgcatcgtcatcaacaac
cacctccgccgcgcccgaggcggcaaggtctcgttcacgcacctcatcggctgggcgctg
atccaggcgctcaaggagttcccgagccagaacgtctactacgacgagcgcgacggcaag
ccgagcctcatcaagcccgcgcacatcggcctcggcatcgccatcgacctgccgaagccc
gacggcacccgtgcgctgctcgtgcccgccatcaagcgcgccgagacgatgacgttcaac
gagtacctcgcggcctacgaagacctggtgcagcgcgcccgcaagaacaagctcacggcc
gacgacttcaagggcgcgacgatctcgctgaccaacccgggcggcatcggcaccgtgcac
tcggtgccccgcctcatgaagggccagggctgcatcatcggcgccggcgcgctcgagtac
ccggccgagttccagggttccagcgaccgcaccctcgcgaacctcgcgatcggcaagacg
atcacgctcacctcgacctacgaccaccgcgtcatccagggcgcgggctcgggcgagttc
ctgaagaccgtgcacgagctgctcatcggtcagcgccgcttctacgaggacatcttcgcc
gcgctccgcctgccctacgacccgatccactgggcccccgacatctcggtcgacatcgcc
agcgcgatcgacaagaccgcacgcgtgcaggagctcatcaactcgttccgcgtgcgcggc
cacatgatggccgacatcgacccgctcgagtacgtgcagcgctcgcaccccgacctcgac
atcgcgagccacgggctcacgttctgggacctcgaccgcgagttcgtcacgggcgagttc
ggcgagtcccgcacctcgctgctgcgcgacatcctcggcgtgctgcgcgactcgtactgc
cgcaccatcggcatcgagtacatgcacatccaggaccccgagcagcgcaagtggatccag
ggcaaggtcgagcgcaagtacgagaagccgacccacgacgagcagatgcgcatcctcggc
aagctcaacgaggccgaggcgttcgagacgttcctgcagaccaagtacgtcggccagaag
cgcttcagcctcgagggcggcgagtcgatgatcgccctgctcgacgaggtgctccagggc
gccgccaaggagggcctcgacgaggtcgccatcggcatggcccaccgcggccgcctgaac
gtgctcaccaacatcgcgggcaagacctacggccagatcttccgcgagttcgagggcgcc
cccgacccgcgcaccgtctccggctcgggcgacgtgaagtaccacctcggcaccgagggc
gtgttcacggccgacacgggcgaggaggtgccggtgtacctcgcggcgaacccgtcgcac
ctcgaggccgtgaacggcgtgctcgagggcatcgtgcgcgccaagcaggaccgccgcccc
gcgggcagctacggcaccctcccgatcctcgtgcacggcgacgcggcgatggcgggccag
ggcgtcgtgttcgagaccctgcagatgtcgcagctgcgcggctaccgcacgggcggaacg
atccacgtcgtcgcgaacaaccaggtcggcttcaccaccgtgccgggcgacgcgcgctcg
tcgatctactccacggatgtcgcgaagaccatccaggccccgatcttccacgtcaacggc
gacgaccccgaggccgtcgtgcgcgtggcggaactggcgttcgagtaccggcagcagttc
caccgcgacgtcgtgatcgacctcgtctgctaccgccgccgcggccacaacgagggcgac
gacccgtcgatgacccagccgctcatgtacaacctcatcgaggcgaagcgctcggtccgc
aagctctacaccgaggcgctcgtcggtcgcggcgacatcaccgaggaggagtaccaggcg
gcgcaccgcgacttccaggagcgcctcgagcacgccttccaggagacccacgccgcgcag
accgcctcgtcggcgcccggcggcgcggccgacatcgagccggccaccagcgcgcccctg
accaaggaggcgccgcccacgggcgagctcgagaccacgggcgtgtccgaccaggtcgtg
cacatgatcggcgacgcgttcaacaacaagcccgacggcttcacggtgcacgcgaagctg
cagcagctgctccagaagcgcctcgacatgagccgcaacggcaagatcgactgggcgttc
ggcgagctgctcgcgctcgggtcgctgctggtcgagggcacccccgtgcgcttcgccggg
caggacgcccgccgcggcacgttcgtgcagcggcactcggtgttccacgaccgcgtgaac
ggccaggagtggctgccgctgctgaacctcagcgacaaccaggcccggttctggatctac
gactcgctgctctccgagtacgcggccatggcgttcgagtacggctactcggtcgagcgc
aaggacgccctcgtgctctgggaggcccagttcggcgacttcgccaacggcgcccagacc
gtcatcgacgagttcatctcgtcggccgagcagaagtggggccagcgctcgagcgtcgtg
ctcctgctgccgcacggctacgagggccagggccccgaccactcgtccgcccgcatcgag
cgctacctgcagatgtgcgccgaacagaacatgacggtggcgcgcccgtcgacgcccgcg
tcgtacttccacctgctgcgccgccaggcgtaccagcgcccccggcgcccgctcgtcgtg
ttcacgccgaaggcgatgctccgcctgcgcggcgcgaccagcgaggtcgccgacttcacg
agcggcaagttcgagccggtgatcgacgacgctcgcatcaccgaccgcgccgcagtgcgc
cgggtcgtgttcatggccggcaagctctactacgacctcgccgccgagctggccaagcac
ccgaaccccgagatcgcgctggtgcgcctcgagcagtactacccgctgcccgccgagcgc
ctcgccgaggtcgcggactcgtacccgaacgccgagctggtctgggcgcaggacgagccc
gagaaccagggcgcctggccgttcttcgccatcgagaccggcaagatctgggatcgcccg
gtgagcgtcgtctcgcgcgcggcatccgcctcgcccgccacgggctcggcgaaggtgcac
gcgcaggagcagaccgagctcgtctcgcgcgcgctgtcgctgtag
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