Ahrensia marina: ABWH92_11065
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Entry
ABWH92_11065 CDS
T10849
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amax Ahrensia marina
Pathway
amax03030
DNA replication
amax03410
Base excision repair
amax03420
Nucleotide excision repair
amax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWH92_11065 (ligA)
03410 Base excision repair
ABWH92_11065 (ligA)
03420 Nucleotide excision repair
ABWH92_11065 (ligA)
03430 Mismatch repair
ABWH92_11065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amax03032
]
ABWH92_11065 (ligA)
03400 DNA repair and recombination proteins [BR:
amax03400
]
ABWH92_11065 (ligA)
Enzymes [BR:
amax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABWH92_11065 (ligA)
DNA replication proteins [BR:
amax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABWH92_11065 (ligA)
DNA repair and recombination proteins [BR:
amax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABWH92_11065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABWH92_11065 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABWH92_11065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABWH92_11065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HNOB
DUF6981
Motif
Other DBs
NCBI-ProteinID:
XHC40352
LinkDB
All DBs
Position
2268819..2270966
Genome browser
AA seq
715 aa
AA seq
DB search
MSVLRDAPVEQLSERQAKKELQALAEEMAAHDRAYHGEDAPVISDAAYDALKARNLAIEA
RFPDLVLAESPSKKVGSAPSEKFAKVTHARAMLSLDNAFSAEDVHEFGARIARFLRLDAP
PAVTAEPKIDGLSLSLRYERGELVTAATRGDGAVGEDVTRNARTIASIPHTLKGKVPDVV
EVRGEVYMTAEDFAALNARMEANGGKVFANPRNAAAGSLRQLDPEITKSRPLAFFAYAWG
ELSEPLADTQMGAVERLEKLGFKINPLMKLCETPDEAIAVYDGIAIQRAELGYDIDGVVY
KVDRLDYQERLGFVSRSPRWAIAHKFPAEQAFTTLENIEIQLGRTGALTPVAKLHPITVG
GVVVSNATLHNADYIAGIGNDGLPIREGRDLRVGDTVIVQRAGDVIPQIVDVLLDKRPAD
SEPFQFPTVCPACGSEAKREVDAKGKPDSVTRCTGGLICPAQAVERLKHFVSRNALDIDG
LGDKQIEAFYEDGLIANAADIFTLQARDARSLKKLKDREGWGETSIANLWAAIDERRQVP
FSRFLFALGARHVGETTARTIARHYTRFDAFRAAMLAAASGDEEAREELVGIDGIGETVA
VSLIQFFGESHNEQVLDALLAEMTIDDEVFEVLESPVAGKVVVFTGSLEKMTRDEAKAMA
ERFGAKVSGSVSKKTDLLVAGPGAGSKLTKAQSLGVETIDEDGWFALVGVTPASE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtgttgcgtgatgcgccagtggagcagctctccgagcgccaggccaagaaagag
ctacaggcgctcgccgaagagatggcggcgcatgacagagcctatcatggcgaggatgcc
ccggtcatttccgacgcagcctatgacgctctgaaggcccgcaatctagcgattgaggcg
cggttcccggacttggtgcttgccgaaagcccttcaaaaaaggttggcagtgcgccatca
gagaagttcgctaaggtcacccatgcgcgggccatgctttcgctggacaatgccttttcg
gctgaggacgtgcacgagttcggggcgcgtattgcgcgttttttgcggctcgatgcaccg
cccgccgtgacggctgaaccgaaaatcgacgggctgtcgctttcgctgcgctatgagcgc
ggcgaacttgtgactgctgcgactcgtggtgatggcgctgttggtgaagatgtcacccgc
aatgcacgcacgattgcctcgatacctcacacactcaaaggcaaagtgccggatgtggtg
gaggtgcgcggcgaggtttatatgacagctgaggatttcgcggcgctcaatgcgcgcatg
gaagccaatggcggcaaagtgtttgccaacccgcgcaacgcggcggccgggtctctgcgc
cagctcgatccagagatcaccaaatctcgacctttggccttcttcgcctatgcctggggt
gaactttccgaaccgctggctgatacccagatgggagcagtggagcgcctggaaaagctg
ggttttaagatcaatccgttgatgaaactctgcgaaacgcccgatgaggcgattgctgtt
tatgacggcattgccattcagcgtgctgaacttggctatgacattgatggcgtggtctac
aaggtggaccggctcgactatcaggagcgtttgggcttcgtttcgcgttcaccgcgctgg
gccattgcgcacaagtttccagccgagcaagcgttcacaacccttgaaaacattgagatt
cagctgggtcgcacgggcgcgctgacgcctgttgccaagctgcatcctattaccgttggc
ggtgtggtcgtctccaacgcgaccctccacaatgcggactatattgctgggattggcaat
gatggattgccgatccgcgagggtagggaccttcgggttggtgacacggtgatcgtgcag
cgggccggtgatgtgatcccacagattgtggacgtgctgctggacaaaagacctgctgat
agcgagcctttccagtttccaactgtgtgtccagcctgtggaagtgaggccaagcgcgag
gtggatgccaaaggcaagccggatagcgtgacgcgttgcaccggcgggctgatttgcccg
gcgcaggcggtggagcggctgaagcatttcgtgtcgcgcaacgccctggacattgatggg
cttggcgacaagcagattgaggcgttttacgaagatggcttgatcgccaacgcggcagac
attttcacgctgcaagcgcgtgatgcgcgaagcttgaaaaagttgaaggaccgcgaaggc
tggggcgagaccagcattgcgaacttatgggcggccatcgatgaacgtcggcaagtgccg
ttttctcggttcttgtttgctctgggtgccaggcacgtgggcgagacgaccgcccgcaca
atcgcgcgtcactacacccgtttcgacgcctttcgtgcggccatgttggccgcagcttcc
ggtgatgaagaagcgcgcgaagaactggtcggcatcgatggaatcggcgaaacggtggcc
gtgtcgctgatccagttttttggtgaaagccacaatgaacaggtgctcgatgcgctgctt
gctgagatgaccatcgacgatgaagttttcgaggttctggaaagtcctgtggctggcaag
gtggttgtgttcaccggctcattggaaaagatgactcgtgatgaggccaaagccatggct
gagcgttttggcgccaaggtttccgggtcagtgtcgaagaagaccgatcttttggttgct
ggccccggggcaggctcaaagctcaccaaagcccagagccttggcgttgaaaccatcgac
gaagatggctggtttgcgctcgtgggcgtgacgcctgctagcgaatag
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