Actinomadura madurae: LUW76_38770
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Entry
LUW76_38770 CDS
T08933
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amaz
Actinomadura madurae
Pathway
amaz03030
DNA replication
amaz03410
Base excision repair
amaz03420
Nucleotide excision repair
amaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LUW76_38770 (ligA)
03410 Base excision repair
LUW76_38770 (ligA)
03420 Nucleotide excision repair
LUW76_38770 (ligA)
03430 Mismatch repair
LUW76_38770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amaz03032
]
LUW76_38770 (ligA)
03400 DNA repair and recombination proteins [BR:
amaz03400
]
LUW76_38770 (ligA)
Enzymes [BR:
amaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LUW76_38770 (ligA)
DNA replication proteins [BR:
amaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LUW76_38770 (ligA)
DNA repair and recombination proteins [BR:
amaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LUW76_38770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LUW76_38770 (ligA)
MMR (mismatch excision repair)
DNA ligase
LUW76_38770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LUW76_38770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
URM99790
LinkDB
All DBs
Position
8156331..8158496
Genome browser
AA seq
721 aa
AA seq
DB search
MTMSDVPAEARQRHLELSEELEDANYRYYVLDQPTLTDAEYDRRMREIRELEERHPELVT
PDSPTQKVGAPIVTDFATVQHLERMQSLDNAMSADELLAWDERVVKEVGTVAGYLCELKI
DGLAIALTYEKGRLVRGVTRGDGRTGEDVTNNIRTISDVPDRLSGDGWPDVLEVRGEVFL
PVEGFEQVNAAQVEAGKDPFANPRNAAAGSLRQKDPRVTAHRPLGMLVHGFGAWRGGTQP
ESQSGAYELMRGWGLPVSDRYKVVGGLDAVREYIAEYGENRHATAYEIDGVVVKVDQFSL
QRRLGSTSRAPRWAIAWKYPPEEVNTKLLDIKVGVGRTGRITPYGVMEPVKVAGSTVDRA
TLHNAGEVKRKGVLVGDTVVLRKAGDVIPEIVAPVTALRDGSEREFQMPSHCPECGTELA
YEKEGDADIRCPNAQYCPGQLRERVFFVASRNALDIEALGYVGATALTQPLEPSDPPVKN
EGDLFHLTVDRLLPIRSVVLDPKTGTAKTDPKTGEPKIVSFFANKEGEPKKTVEILFDEL
EKAKRQPLWRVLVALSIRHVGPSAARDLAREMRSMDAIAEATEEELAAVDGVGPTIAASI
KNWFAVDWHREIVDKWRAAGVRMEDEGAAGPRPLEGVSVVITGSLEGFSRDSATEAVQRL
GGKVSGSVSKKTGFVVVGDSPGSKYDKAVKLGVPVLEEDGFRVLLADGPDAAKNVTMRAD
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgagcgacgtacccgcggaggcgcggcagcggcacctggagctgagcgaggag
ctcgaggacgccaactaccggtactacgtcctcgatcagccgacgctcaccgacgccgag
tacgaccggcggatgcgggagatccgcgagctggaggagcggcacccagagctcgtcacc
cccgactcgccgacgcagaaggtcggcgccccgatcgtcaccgacttcgcgaccgtccag
cacctggagcggatgcagagcctcgacaacgcgatgagcgccgacgagctcctggcgtgg
gacgagcgggtggtcaaggaggtcggcacagtcgccggctacctgtgcgagctgaagatc
gacgggctggcgatcgcgctgacgtacgagaaggggcggctggtccgcggggtcacccgc
ggcgacgggcgcaccggcgaggacgtcaccaacaacatccgcacgatctccgacgtcccg
gaccggctgtccggcgacggctggccggacgtgctggaggtccgcggcgaggtcttcctg
ccggtcgaggggttcgagcaggtcaacgcggcgcaggtcgaggcgggcaaggacccgttc
gccaacccgcgcaacgccgcggccgggtcgctgcggcagaaggacccgcgggtcaccgcg
caccggccgctcggcatgctcgtccacgggttcggcgcgtggcggggcgggacgcagccg
gagagccagtccggcgcgtacgagctgatgcgcggctggggcctgccggtgagcgaccgc
tacaaggtcgtcggcgggctggacgccgtccgggagtacatcgccgagtacggcgagaac
cggcacgccaccgcctacgagatcgacggcgtcgtcgtcaaggtcgaccagttctcgctg
cagcggcggctcggctcgaccagccgggcgccgcgctgggcgatcgcgtggaagtacccg
cccgaggaggtcaacaccaagctcctcgacatcaaggtcggtgtggggcgcaccgggcgc
atcaccccgtacggcgtgatggagccggtgaaggtcgccgggtcgacggtcgaccgggcc
acgctgcacaacgcgggcgaggtcaagcgcaagggcgtgctggtcggcgacacggtcgtc
ctgcgcaaggccggcgacgtcatcccggagatcgtcgcgccggtcaccgcgctgcgggac
ggctccgagcgcgagttccagatgccctcgcactgccccgagtgcggcaccgagctggcg
tacgagaaggagggcgacgccgacatccggtgcccgaacgcgcagtactgccccgggcag
ctgcgcgagcgggtgttcttcgtggcgagccgcaacgcgctcgacatcgaggcgctcggc
tacgtcggggcgaccgcgctcacgcagccgctggaaccgtccgacccgccggtcaagaac
gagggcgacctgttccacctgaccgtcgaccggctcctgcccatccgcagcgtcgtgctc
gaccccaagaccggcaccgccaagaccgatccgaagaccggcgagccgaagatcgtctcc
ttcttcgcgaacaaggagggcgagccgaagaagacggtcgagatcctcttcgacgagctg
gagaaggccaagcggcagccgctgtggcgggtgctggtggcgctgtcgatccggcacgtg
gggccgtccgccgcgcgcgacctcgcccgcgagatgcgctcgatggacgcgatcgcggag
gcgaccgaggaggagctcgcggcggtcgacggcgtcgggccgaccatcgccgcgtcgatc
aagaactggttcgccgtcgactggcaccgggagatcgtcgacaaatggcgggccgcgggc
gtccggatggaggacgagggcgccgcgggcccgcgcccgctggagggcgtcagcgtggtg
atcaccggctccctggaggggttcagccgggactcggcgaccgaggcggtgcagcgcctc
ggcggcaaggtgtccgggtcggtgtcgaagaagacgggcttcgtggtcgtgggcgacagc
cccgggtccaaatacgacaaggccgtcaaactgggcgtaccggtcctggaggaggacggc
ttccgcgtcctgctggccgatgggccggatgcggccaaaaacgtgactatgcgcgccgac
ggataa
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