Amycolatopsis mediterranei U32: AMED_1669
Help
Entry
AMED_1669 CDS
T01269
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03030
DNA replication
amd03410
Base excision repair
amd03420
Nucleotide excision repair
amd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMED_1669 (ligA)
03410 Base excision repair
AMED_1669 (ligA)
03420 Nucleotide excision repair
AMED_1669 (ligA)
03430 Mismatch repair
AMED_1669 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amd03032
]
AMED_1669 (ligA)
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_1669 (ligA)
Enzymes [BR:
amd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMED_1669 (ligA)
DNA replication proteins [BR:
amd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMED_1669 (ligA)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMED_1669 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMED_1669 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMED_1669 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMED_1669 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADJ43480
LinkDB
All DBs
Position
1781262..1783442
Genome browser
AA seq
726 aa
AA seq
DB search
MSSTELPQDQVAAVDAEVAVEDITDVPADVRERHSALAEELRDHQFRYYVLDSPIISDGQ
FDELLGELQRLEDAHPALVTPESPTQRVGGTFSTEFTAHDHLERMLSLDNVFAEDEFLAW
VERVEKEVGRTEFLAELKIDGLAINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPQ
TLTGTDQFPVPALVEVRGEVFFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPKI
TRERRLRLICHGLGKRAGFEPQRQSEAYDALAAWGLPVSPHSKVLTSADELTAHIAYWGE
HRHDAEHEIDGVVIKVDQVALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTG
RVTPFAVTEPVTVAGSTVSRATLHNQEEVKRKGVLIGDRIVIRKAGDVIPEVLGPVVDAR
TGDEREFVMPTHCPECGTELAYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVL
GYEAAVALLDARVVADEGDVFDLNEDSLAEVELFRTKAGELSANARKLLSNLDAAKDRPL
WKVLVALSIRHVGPTAAQALAREFGSIERIEQATEEELSAVDGVGPTIAHATQEWFDVAW
HREIVEKWRRAGVRMEEARDESIPRHLEGLSIVVTGSLDGFSRDEAKEVVMARGGKAAGS
VSKKTAFVVVGDSPGSKYDKAVQLKVPVLDEAGFRVLLEQGPDAAREVALPAGEETAEQE
TGGTDG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcaccgagcttccccaggaccaggttgcggcggtcgacgccgaggtggccgtg
gaggacatcaccgatgtcccggccgacgttcgagagcggcacagcgccctggccgaggaa
ctgcgtgaccaccagttccgctactacgtcctggactcgccgatcatctccgacgggcag
ttcgacgagctgctgggcgaactgcagcggctcgaggatgcgcacccggcgctggtgaca
cccgaatcgccgactcagcgggtcggcggcacgttctcgaccgagttcaccgcgcacgac
cacctcgagcgcatgctcagcctggacaacgtgttcgccgaggacgagttcctggcctgg
gtcgaacgcgtcgagaaggaggtggggcgcacagaattcctcgccgagctgaagatcgac
ggcctggcgatcaacctcctgtacgaaaacggccacctgacccgggccctcacgcgaggc
gacggccggaccggtgaggacgtcacgctcaacgtccgcacgctcgaccaggtgccgcag
acgctgaccggcaccgatcagttcccggtgcccgccctggtcgaggtgcgcggcgaggtc
ttcttccgcgtcgaggacttcctcgagctgaacgcgaagatggtcgaagccggcaaaccg
ccgtatgcgaacccgcgcaacaccgcggccggctcgctgcggcagaaggatcccaagatc
actcgcgagcgccggctgcggctcatctgccacggactcggtaaacgcgccggcttcgag
cctcagcgccaatcggaggcctacgacgcgctggccgcgtgggggctgccggtgtcgcca
cacagcaaggtcctgacttcggctgacgagctgaccgcgcacatcgcctactggggcgag
caccggcacgacgccgagcacgagatcgacggcgtggtcatcaaggtcgaccaggtggcg
ttgcagcggcggctgggcacgacgtcgcgcgccccgcggtgggcgatcgcgtacaagtac
ccgccggaagaggcgatcacgacgctgctggacatccaggtcggcgtcgggcgaaccggg
cgcgtgaccccgttcgcggtcaccgagccggtcacggtcgcggggtcgaccgtctcgcgc
gccaccctccacaaccaggaggaggtcaagcgcaagggcgtgctgatcggcgaccggatc
gtcatccgcaaggccggcgacgtcattcccgaggtcctcggtccggtcgtggacgcgcgc
acgggcgacgagcgcgagttcgtcatgcccacccactgcccggaatgcggcacggagctc
gcctaccagaaggaaggcgacaaggacatccggtgcccgaacacccggttctgccccgcg
cagctgcgggagcgcctgttccacctggccggacgcggcgccttcgacatcgaggtcctc
gggtacgaggctgcggtcgcgctgctcgacgcgcgggtggtcgccgatgagggcgacgtc
ttcgacctgaacgaggacagcctcgccgaggtcgagctgttccggaccaaggcaggggag
ctgtcggcgaacgcgcggaagctgctctccaacctcgacgcggccaaggaccggccgttg
tggaaggtgctggtcgctttgtcgatccggcacgtcgggccgacagcggcgcaggcgctg
gcccgtgagttcggctcgatcgaacgaatcgagcaggccaccgaggaggaactttcggca
gtcgacggcgtcggcccgaccatcgcccacgcgacgcaggagtggttcgacgtcgcctgg
caccgggagatcgtcgaaaagtggcgacgcgccggcgtgcggatggaggaggcgcgcgac
gagtcgatccctcgccacctcgaggggctgtcgatcgtggtcacgggttcgctcgacggc
ttctcgcgcgacgaggccaaggaagtcgtcatggcccgcggtggcaaggctgccgggtcg
gtctcgaagaagaccgccttcgtcgtcgtcggggactcgcctggttcgaaatacgacaag
gccgttcagctcaaggtgccggtgctcgacgaagccggcttccgcgtcctgctggagcag
ggccccgacgcggcgcgggaggtggcgctgccggccggcgaggagaccgccgagcaagag
accgggggaacggatgggtga
DBGET
integrated database retrieval system
