Astyanax mexicanus (Mexican tetra): 103021415
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Entry
103021415 CDS
T05042
Symbol
zfr
Name
(RefSeq) zinc finger RNA-binding protein isoform X1
KO
K13203
zinc finger RNA-binding protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103021415 (zfr)
Spliceosome [BR:
amex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
103021415 (zfr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DZF_N
DZF_C
zf-met
zf-C2H2_jaz
zf-U1
Motif
Other DBs
NCBI-GeneID:
103021415
NCBI-ProteinID:
XP_049326577
Ensembl:
ENSAMXG00000019511
LinkDB
All DBs
Position
22:14709772..14738287
Genome browser
AA seq
1094 aa
AA seq
DB search
MSQSSSEKRNPMIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHGAAAQYSQQPAAGVAY
THPTTVASYTVHQAPVAAHTVAAAYAPTAATVAVARPAPVAVAATAAAYGGYQPTHAATD
YGYTHRQPEVPPPPPPVTSQNYQDSYSYVRSSAPAVAYDSKQYYQQPTATAAVAAAAAQP
QPTVAESYYQTAPKTGYSQGATPYTQTQQTRQVTAIKPATPSPATSTFSIYPVSSAVQPV
AAAAAAASVVPSYSQSPTYSTNAVTYSDLNHHFFPGTSYSGYEAAVYSAASSYYQQQQQQ
QKQAVAAAAATAAWTGSTYTKKTPFQNKPLKPKQPPKPPQIHYCDVCKISCAGPQTYKEH
LEGQKHKKKEAALKVSQSSSSSSGGSSSARGTQNQLRCELCDVACTGADAYAAHIRGAKH
QKVVKLHTKLGKPIPSTEPSVVTQASTSTTSATSKTASAAINSSTSSTVSSLSSSSSISS
SYLKPLGMVNSTLTSAVQGKSPAPSSLSATSAAVKKVNTPKINFVGGNKLQTTGVKMDDS
KVETAKPAQLSLVAPSQEVKNDIPDPMSPQSALAALQSDVQPVGHDYVEEVRNDEGKVIR
FHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQ
KEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWDDRRRMPEGGYPQGPPGPPGLLG
VRPGMPMPQPQGPVPPRRPDSSDDRYVMTKHAAIYPSEDELQAIQKIVSITERALKLVSD
IITDQDKGKEDEKEKKEPPKDRALKGVMRVGVLAKGLLLRGDKNVNLVLLCSEKPSKSLL
SRIVEHLPKQLTLVTPEKYEVKGSVQESAIILTSGADPKMQVTITLTSPVIREEGPRDGD
VTSGMVKDPADVLDRQKCLDALAALRHAKWFQARANGLQSCVIVIRILRDLCQRVPTWSA
FPSWAMELLVEKAISSASGPMSPGDALRRVFECISSGILLPGGPGLVDPCEKNPTDTLGA
MEEQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQLNQRFNMRNNRKRRRDNSDGTDGF
EGEGKKDKKDYDGF
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagagttcgtcagagaagaggaacccaatgattcccatatgtccagtggtctcc
ttcacctatgtgcccagccggctaggtgaagatgccaaaatggctaccggcaactacttt
ggatttacccacggtgctgctgcgcagtacagtcagcagccggccgctggggtagcctat
acccaccccactacagtggccagctatactgtgcatcaggcaccagtggcagctcacacc
gtggccgcagcatacgcccccacagccgccacagttgccgtagccagacctgcaccagtt
gccgtggcggccactgctgccgcttatggagggtaccagcctacccacgcagctactgac
tacgggtacacccatcgccagccggaagtgcccccacctcctcctccggtcacatcccag
aactaccaggattcctattcctacgttcgatcctcagccccggctgtagcttacgacagt
aaacaatactatcagcagcccacagctacggcagctgtagcggcagcagctgcccagcca
caacccactgtggcggaatcctactatcaaacagcgcccaagactggatacagccagggc
gccacaccgtatacgcagacccagcaaacgcgtcaagtgactgctataaagccagccacc
ccgagcccggctacctccaccttctccatctaccctgtatcctctgctgttcagccagtg
gcggcagcagcagctgcagcatcggtggtcccgtcttactcccagagtcccacctacagc
actaatgctgtcacatactctgatctaaatcatcatttcttcccaggcacatcgtattca
gggtacgaggcagcagtgtactccgcagcgtcctcctactaccagcagcagcaacagcag
cagaagcaggctgtagcagcagctgcagccactgcagcgtggactggcagcacgtacacc
aagaagaccccctttcagaacaagccactcaaacccaaacagcccccaaagccaccgcaa
atacactactgtgatgtttgcaaaattagttgtgcgggtccacagacatataaagagcat
ttggaaggtcagaagcataagaagaaggaggcagcgctgaaggtttctcagagcagtagc
agcagtagcggaggaagcagctccgcccgcggcacgcagaaccaactgcgctgtgagctc
tgtgatgtcgcctgcaccggggcggatgcctacgctgcgcacatccgcggagctaagcac
cagaaggttgtgaaacttcacaccaaactagggaaacccatcccttcaacagagcccagt
gtggtgacccaagcctccacatccaccacatcagctaccagtaagacggccagcgctgcg
atcaacagttccacaagcagcactgtgtcctctttgtcttcgtcctcaagcatctcaagt
tcttatctcaaacctcttggtatggtcaacagcaccctgacctctgcagtgcagggcaag
agccctgcccctagcagcctttctgcaacctcagctgcagtcaaaaaggtcaacacaccc
aagatcaactttgttggtggaaacaagttgcagactactggtgttaagatggatgactct
aaagttgagactgctaaacctgcacagttgtcgttagtcgcaccatctcaggaggttaaa
aacgacatccctgatccaatgtccccgcagtctgctctggcagctctgcagagtgatgtc
cagcctgtaggacatgactacgttgaagaggttcggaatgatgaaggaaaagtcatccgt
ttccactgtaaactgtgtgaatgtagttttaatgatcccaatgcgaaagagatgcatctt
aaaggaaggagacatcgtttgcagtacaagaaaaaggtgaatccagacctccaggtggaa
gtgaagcccagtatcagagctcgtaagatccaggaggagaagatgaggaagcagatgcag
aaagaggagtactggagacgaagggaagaggaggagcgctggagaatggagatgaggcgc
tatgaggaggacatgtactggcggcgaatggaggaagagcagcaccactgggacgacagg
cgcaggatgccagagggtggatatccacagggtccgccaggacctcctggtctccttggg
gtgaggcctggaatgcccatgccacagccgcaaggacctgtgcccccacgtcgccctgat
tcttctgacgatcgctatgtgatgaccaaacacgccgctatttacccttcagaagatgag
ctccaggccatccagaagattgtttccatcaccgagcgtgcccttaagctagtgtctgac
attatcactgaccaagacaagggcaaagaggacgaaaaggagaagaaggagccgcccaaa
gaccgagcactgaagggtgtgatgagggtcggtgtcctggccaaagggctgcttctgcgt
ggagacaagaatgtcaaccttgttctcctgtgttctgaaaagcccagcaagagtctgctg
tcacgcattgtagaacatctccctaaacagctcacactggtgacgcctgagaaatatgag
gtgaagggctctgtccaagaatctgccatcatcttgacgtccggtgctgatcccaagatg
caggtgaccatcacgctgacctcaccagtcattcgagaggagggccctcgggatggagat
gtaacctcgggtatggtgaaagacccagcggacgtcttggacaggcaaaaatgccttgac
gctctggctgccctccgccacgctaagtggttccaggctagagccaacggactgcagtct
tgtgtgattgttattcgtatcctgcgtgacctttgtcagcgagttcccacctggtctgct
tttccaagctgggccatggagctgcttgtagagaaggcaatcagcagtgcctctggacca
atgagccctggtgatgcgttacgacgagtctttgaatgtatttcctctggcattctgctc
cctggtggtccagggttggtcgatccgtgtgagaaaaatcccacagacacgctgggtgcc
atggaggagcagcagagggaagacatcacgtcaagtgctcagttcgctttgagactcctg
gccttccgtcagatccacaaggtgctgggtatggaccccctgcctcagctgaaccagcgc
ttcaacatgaggaacaatcgcaagaggcgacgtgacaacagtgacggcaccgacggcttc
gagggcgaggggaagaaagacaagaaggattacgatggcttctaa
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