Astyanax mexicanus (Mexican tetra): 103021680
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Entry
103021680 CDS
T05042
Symbol
tnpo1
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103021680 (tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103021680 (tnpo1)
03009 Ribosome biogenesis [BR:
amex03009
]
103021680 (tnpo1)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103021680 (tnpo1)
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
103021680 (tnpo1)
Pre-60S particles
103021680 (tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TPR_IMB1
HEAT_GCN1
HEAT_2
Vac14_Fab1_bd
TOR1L1_N
Arm
TPR_IPO5
IBN_N
Cnd1
HEAT_EF3_N
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
CEP104-like_TOG
Adaptin_N
HEAT_GCN1_C
Ltn1_1st
MMS19_C
UNC45-central
VPS15-like_hel
TPR_TTI1_C
Dopey_N
DUF3689
Motif
Other DBs
NCBI-GeneID:
103021680
NCBI-ProteinID:
XP_007259683
Ensembl:
ENSAMXG00000009842
UniProt:
A0A8B9KS16
LinkDB
All DBs
Position
1:22633145..22664357
Genome browser
AA seq
892 aa
AA seq
DB search
MECQWKPDEQGLQQILQLLKESQSPDTGTQRSVQQKLEQLNQFPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHYQNFPNGVSDFIKNECLQNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNVMIPKFL
QFFKHSSPKIRSHAIACVNQFIISRTQALMLHIDPFIENLFALAGDEEPEVRKNVCRALV
MLLEVRMDRLLPHMHNITEYMLQRTQDQDENVALEACEFWLTLAEQPVCKEVLSGHLSKL
APVLVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIRPRFHRSRTVAQQHEGGDGIEDEED
NDEDDLDDDDTISDWNLRKCSAAALDVLANVFRDDLLLHLLPLLKELLFHPDWVIKESGI
LVLGAIAEGCMQGMIPYLPELIPHLVQCLSDKKALVRSITCWTLSRYAHWVVSQPADAYL
KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAFILDTLVFAFSKYQHKNL
LILYDAIGTLADSVGLHLNKPEYIQMLMPPLIQKWNQLKDEDKDLFPLLECLSSVATALQ
SGFLPYCEPVYQRCVNLVQKTLAQAMLHQSQPDVYEAPDKDFMIVALDLLSGLAEGLGGN
IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN
PELISVCNNATWAIGEISIQMGSEMQPYVSMVLHQLIEIINRPNTPKTLLENTAITIGRL
GYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMITVNPGGVVQDFIFFCDA
VASWVNPKEDLRDMFYKILHGFKNQVGEENWRRFSDQFPLPLKERLTAFYGV
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggagtgccagtggaagccagacgagcaggggcttcagcagatcctacagcttctcaag
gagtcccagtctcccgacacgggcacgcagagatccgtccaacaaaaacttgaacagctc
aatcaatttccagacttcaacaattacttgatattcgtgctcacaaagctcaagtcagaa
gatgagcccactcgttccctcagtgggttaatcttgaagaacaacgtaaaagctcattac
cagaactttcctaatggagtctctgactttatcaaaaacgagtgcttgcagaacattgga
gactcttcacctcttatcagagccactgtgggtatactcatcactacaatagcctctaaa
ggagagttacagaactggccagagcttttacctaaactctgtttgctgctggattcagag
gattacaacacatgtgaaggagcttttggagctctgcagaagatctgtgaggattcggct
gaaattctggacagtgacgtgctcgaccgacctctgaatgtaatgataccaaaatttcta
cagttcttcaagcacagtagccctaaaatcagatctcatgccattgcttgtgtgaatcag
tttatcatcagcagaacacaggccctgatgctgcacatagatccattcattgaaaacctg
tttgcactggcaggggacgaggagccagaggtcaggaagaatgtatgcagggctctggtc
atgctgctggaggtccgcatggaccgcctcctcccccacatgcacaacattacagagtac
atgctgcagcggacgcaggaccaggatgagaatgttgcactggaagcctgtgagttctgg
ctcacgctggcagagcagcctgtttgtaaagaagtgctttctggacacctgtccaagtta
gccccagttttggtaaatggaatgaaatactctgaaatcgacatcattcttctgaagggt
gatgtggaggaagatgaagcagttccagacagtgagcaggacattcggcctagattccac
cgctcacgtacggttgctcaacagcacgagggtggggacggcattgaagatgaagaagac
aacgatgaggacgatctggatgacgacgacacaatctcagactggaacttgcgaaaatgc
tccgctgcagctttggatgttctggcaaatgttttcagagatgacctgctgctacacctt
cttccactgttgaaagaactgcttttccacccagactgggtcatcaaagaatctggcata
ctggtgcttggagccattgctgaaggctgtatgcagggtatgattccttacctacccgag
ctgattcctcacctggtgcagtgtctgtccgataaaaaggctctggtccgctcaatcacc
tgctggactctaagccgctacgcacactgggtggtgagccagcctgccgatgcctacctc
aagcccctcatgactgagctgctcaaacgcatactggacagcaacaagcgtgttcaagag
gcagcatgcagtgcctttgctactctggaggaggaggcatgtacagagttggtgccctat
ctggccttcattctggacaccttggtctttgcctttagtaaataccagcacaagaacctg
ctcatcctatatgatgccatcggcacactggcagattctgtaggcctccatcttaataaa
ccggaatatattcagatgctgatgccaccattgattcagaagtggaaccagctgaaagat
gaagataaagaccttttccctctcctggagtgcctgtcatctgtggctacagccctgcag
agcggcttcctgccatactgtgaaccggtctaccagcggtgtgttaacttggtccagaaa
acccttgcgcaagccatgctccaccagtcccagcctgatgtctatgaagctcctgataaa
gatttcatgattgttgctctggatttgctcagtggactagctgaaggtctcgggggcaat
attgaacagttggtggctcggagcaacatcctcaccctcatgtatcagtgcatgcaggat
aaaatgccagaggtacgacagagttcttttgctctcttgggagatctcactaaagcctgt
tttcaacatgtcaaaccatgcattgcggatttcatgcctattttaggcacaaacctgaac
ccagaactaatatctgtgtgcaacaatgcaacctgggccatcggggaaatctctattcaa
atgggctctgagatgcagccctatgtgtccatggtcttacaccaactgatagagatcatt
aacagacccaacacacccaagactctgctggagaatacagcaataacaattggtcgtctt
ggttacgtttgtcctcaagaggtggcacccatgctacagcagtttataagaccctggtgc
acctcgctgcgcaatataagagacaatgaagagaaagactctgccttcaggggaatctgc
accatgatcactgtcaaccctggaggtgtggtgcaggactttatatttttctgtgatgct
gttgcatcatgggtgaaccctaaagaggatctacgagacatgttctataagatcctacat
gggtttaagaaccaggtgggagaagagaattggaggcgtttctcagatcagttccccctc
cctcttaaggagcggcttacagccttctatggagtctaa
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integrated database retrieval system
