Astyanax mexicanus (Mexican tetra): 103021686
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Entry
103021686 CDS
T05042
Symbol
npas1
Name
(RefSeq) neuronal PAS domain-containing protein 1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103021686 (npas1)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
103021686 (npas1)
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
103021686
NCBI-ProteinID:
XP_007260958
UniProt:
A0A8T2L261
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Position
18:24276464..24345642
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AA seq
766 aa
AA seq
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MAAMPFVTEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRHFASQGDPPWSPLMEGENNCNKVRRSSHSLA
TDIFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIKPHLRAEAGCQTTQESISSSASTSSLAGTPEPAPSSPLSSGDELAERGFF
IRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSSRSLHRPMGLVALAHTLPPSTL
NEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDTIRQSHE
DLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYILSRTEMPDTPL
DLLQLPETLRAERLRSNSSPRDISPKAQGPTGTQPAKGRNDPERKGRESYAHPTVSQSED
RRKRPNRSSPENGPPETRRRLEVFRQREGSPSGSSEPVSDSEAGEEEEEEEKESEWDHNG
NSKRVKTEEGVSKQASRVSSLDKAHNGRAVIQQLKSVVTSTAGSNIKTERLASGGRWSHP
LTGAHVSSGLNGSSPPSQVPDSIASEVPAKGLFSPPSPTLSSPIPASPLPREERPIHNAR
APDYELLQRLAAGGAAGRVLFHPLALGPQGPQSLYAPSTIRYAPPELPTDSHRTDHTPKS
PTFFPHLQRIAGLPPFSGFSPSEPPFHPTLPFCMNGLRGAAGTEED
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggcggccatgccgttcgtcaccgaggggaagtgtgtgagtgtggagtgggacttccta
caaggactcctcgccaaaccgcccaccctgccctgcttacaaaacctgcggaaggaaaag
tcccgaaacgcagctcgatctcgccgcgggaaagagaactttgagtttttcgagttggcc
aagatgcttcccctacccggtgctatcaccagccagctggacaaggcctctgtcatcaga
ctgaccataagctacctgcacatgagacacttcgctagccagggggacccaccatggagc
cccctgatggaaggggagaataactgcaacaaggtgcggagaagcagtcattcactggct
actgacatatttgagcagcacctgggagcacatctgttacagtctctggacgggtttgtg
ttcgttgtcagccaagaaggaagattcctctacatctctgagaccgtttccatctacctg
ggcctctcgcaggtggagctgactggcagtagtgtgtttgactacatccaccctgcagac
cacgtggagatggcagagcgcctcggaataaagccacacctccgagcagaggcgggctgt
cagacgactcaggaaagcatctcaagctccgcctccacttcttccctggctggcacacct
gaaccagctccctctagtcctctctcatccggggatgagctggcggagcgaggtttcttt
atccggatgaaatccaccctcacaaagcgcggactccatgtcaaatcctccggttataag
gtgatccacgtaacaggccgcattcgctgtcgccctgccctggtaccaggttcctcccgc
tcgcttcatcgaccaatgggattggttgcccttgctcacaccctccccccctccactctc
aatgaagtgcgcatggagagtcaaatgttcgtcttccgggtcaatatggatctacaggtc
acctactgtgagaacaggatctcggagtatatggatctgagtcctgctgaggtggtggga
cacacctgctatcactttatccacgtggaagatttggacaccatccgacagagccacgaa
gacttgctgagaaaggggcaggttgtaactggttactatcgctggctgcagaggagagga
ggctacctatgggtccagtcctgcgccactgtgtccatcaaccacaaagcgccacacgaa
cgcaacgttatctgggtcaactatatactcagtcgcacagaaatgccagacacaccactg
gatttactacaactcccagaaaccctgcgagccgagcgtctgcggtcgaactcctctcct
cgggacatctctccaaaggcacaaggccccactggcacccagccagcaaaaggccggaac
gatcccgagcgcaaaggaagagaatcgtacgctcacccaactgttagccagtcagaggac
aggaggaagaggcccaatcgttcaagccctgaaaacggtcccccagaaacaaggaggcgg
ctagaagtgttccggcaaagagagggcagcccgtcaggatcatcggagccagttagcgac
agcgaggccggcgaggaagaagaagaggaagagaaggaaagcgagtgggaccataacggc
aacagcaagagggtgaaaaccgaggagggcgtgtccaagcaggccagcagggtgagcagt
ctggataaagcccataatggccgtgctgtgattcagcaactgaagagtgtggtcaccagc
acggctgggtcaaacattaaaactgagcgcttggcttccgggggccgatggagccaccct
ctgaccggtgcccatgtttccagtggcttaaatggtagtagccccccttctcaagttcca
gactcaatcgccagtgaggtcccagccaagggtcttttcagccccccctctcccaccctg
tcttcacccatcccagcgtcgcccctgcccagagaagaacgccccatccacaacgctcgt
gccccagactacgagctcctccagagactggctgcaggcggggcagctggacgtgtcctc
ttccacccgctggcccttggccctcagggccctcagagcctctatgccccaagcactatt
cgctacgccccaccagagcttcccaccgacagccaccgcactgaccacacccccaaatct
cccaccttcttcccccacttgcagagaattgcggggctgccacccttcagcggcttttcg
ccctctgaacctccgtttcatccaacgctgcccttctgcatgaacggactgagaggggca
gcagggacggaggaggactga
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