Astyanax mexicanus (Mexican tetra): 103021736
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Entry
103021736 CDS
T05042
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103021736 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103021736 (arid1aa)
03021 Transcription machinery [BR:
amex03021
]
103021736 (arid1aa)
03036 Chromosome and associated proteins [BR:
amex03036
]
103021736 (arid1aa)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Helix-turn-helix
ARID
103021736 (arid1aa)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103021736 (arid1aa)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103021736 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
103021736
NCBI-ProteinID:
XP_007251849
Ensembl:
ENSAMXG00000020237
UniProt:
A0A8B9JMD7
LinkDB
All DBs
Position
6:32251394..32278884
Genome browser
AA seq
2298 aa
AA seq
DB search
MAAQVASATSLNTSPPSELKKPDRDPKEESVPGEKQQENKEPGLESGSPGRGELHDRADV
GNAGGGGESEMKNGNGNPSRVNNTQNDTTGPEGSTHPGMVHHHASAFPPPSYGYSQHYGR
APFHQHGGQQSPGMAAAAGPGALSSNMMDPYQANSHDHGFPNHHFNSYGPFPSRTPYPGQ
GYAVNSPRNTPAQAAGGQAAKPQPAGGSTAMAASYNNQRYTMGNPQPTSTPTLNQLLTSP
SSSRGYPNYPQSDYNNQEGANKGPAEIGSSGQYGGGHPGWQQRTHHPPPMSPGSTGQPLG
RNQAPGAMDQIGKIRGQPYGAGSPYSQQPHQGPPGPQQGPAYPGQGYGPPGPQRYPMGMQ
GRMQYGQQMASYGQQGPGGYGQQGQQPYYGQQGQGPLTGQQQSSYPQPSSGQQGNQAPYS
QQPHASQPSAPHGQGGSPYQQSHMPQQSQGSMSGPPQGPSQSQSPYSQPTAPQSSQPPYT
QQQVPPSQPQQPVSSQVPPGSQAQPNYPPGQGPQQPPSQQPSQTPTPGSQQQPTGHGQMP
QGQPTSYPQNASQQQQQQQQQQQQTPYQRFPPPPQEISQESFSSQSSAPPSSQPVASSKA
GSEDMQGRPSSLPDLSGSIDDLPTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSP
HLPGIRGPSPSPVGSPASATASRSGPLSPAAMPGNQMPPRPPSGQSDGMMHSAINQPGGM
GQERGFMQRNPQMPPYGSPQSGSALSPRQSSGAQMHGAMGPYQQNNSLGSYGPQGGQYGP
QGYPRQPGYGGMPNANYPGPGMGGSMNPIPGQGGGPSFAGMPPGRMPHGQMGARPYGPNM
GPNMAPNMAPNMGNMPPQVASGMCPPPGMNRKPQEAAAMQHGATNSIHNRLPGYPNMSPG
MMGSGPPYGPSMNNMPGMMNTQAQPFPMGGNMPNNSSGMSPGPEYGMDGKMNQAPKINNK
VEGTPKTESKSKKSSSSTTTNEKITRLYELGSEPERKMWVDRYLAFIEEKAMGMTNLPAV
GRRPLDLFRLYVSVKEIGGLTQVNKNKKWRELATSLNVGTSSSAASSLKKQYIQCLYAFE
CKIERGEDPPPDILSTESKKNQPKIQPPSPAGSGSLQGPQTPQSTSSSMAESGDLKPPTP
ASTPHSQMPSMQSGRSSVNLQDPFAESNDPAFSRRNTMTPNSGYQSGMSTPEMPTRMGPY
EPNKDPFGGMRKVGEQFIPGGQGPNSTLGEQFNRGQGGPIGNMPMGQRQQYPYGPGYERR
PESGMGPEGSSMGPGVPQPNMIPSNPDAGMYSPNRYPPQQQRHDSYGNQYPGQGAPPGGS
YPNQQPGMFPQQQSNYKRPGEGAYPPAKRHHDGEMYSGPYSGQQQQQQPQAPPTAPSSGQ
QDMFNQYGSSYPGSERRPPGQQNQFPFPFGRDRMQPGSGPNSQGSMPPQMMGSSMQSGPD
GPQGAMWQGRGEMGYSNYPNRQGPPGGPAQGPGYHGMNRSDEMMSSEQRMNHEGQWPGQR
QPPYTPAGTGPPMNRPLQSNYQSSQSMQNHIPQVSSPTPMPRPIESRTSPSKSPYMHSNI
KMQKAGPPVPASHIIPSSVQPPLMRRDPPFPPGSVEASQPVLKARRRLTMKDIGTPEAWR
VMMSLKSGLLAESTWALDTINILLYDDNSISNFNLIQLPGFLELIVEYFRRCLIEIFGIL
REYEVGDPGQRTLLDPNALKNEEHCEDEEGPLIEGLDDYETEEEDEGDEDNLSSEPQEHS
SSVQPQIKLEPRTSDSKKDEDSRVTEKASSTESKTSEPPTSDLAVAQDKPKQASKFDRLP
LKVVKKKDPFVVDCSNKLGRVQEFDSGLVHWSIGGGDSTEHIQTHFESKMDLLQPRKWML
TTQASGRKKSAQRRETEVTAVYSSSLERRKDNDQRTSQQSPTEKPKDDVSDVKEEKPSNC
SENAPESALQKEKDKEKEGSERTNQESSKLALPNISSTLQSQRSVTVLEDEPHSKDEAPL
ITLSDWQDSLARRCVCVSNIVRSLSFIPGNDLEMSKHPGLLLLLGRLVLLHHWHPERKQA
PLTYEKEDEADEDIGHGKEEWWWDCLELLRENCLVTLANISGQLDFSIYSESICLPLLDG
LLHWAVCPSAEAQDPFPTLGLNGALSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKL
FGNLVRLVGERKVPVCREMAVVLLANLAQGDSMAARAIAVQKGSVGNLLGFLEDSLAATQ
FQQSQGSLLHMQGAHFEPTSVDMMRRAARALHALAKVEENHSEFTLYESRLLDLSVSPLM
NSLVSHVICDVLFLIGQS
NT seq
6897 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgctacctctctcaacaccagtccgccttccgagctgaaa
aaaccggatcgagacccaaaggaggagtcggtaccgggggagaagcagcaggaaaataag
gagccgggactcgagagcggatctccgggccgtggggagctgcacgaccgggccgatgtt
ggaaatgcagggggaggaggggagtcggagatgaagaacgggaacggaaacccttctcga
gtgaataatactcaaaatgataccactggaccggaggggagtacccacccggggatggta
caccaccacgcgtccgcttttccaccgccttcctacggttacagtcaacactacggacgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcggggcca
ggcgctctgtctagcaacatgatggacccgtatcaggcaaactcgcacgaccacggcttc
cctaaccaccactttaacagctacggcccgtttccgagccggacgccctaccccggccaa
ggctacgccgtgaactccccgcgcaatactccggctcaggcggcaggggggcaggcagcc
aagccacagccagcgggaggatccacggctatggctgcatcgtacaataatcagaggtat
actatgggaaatccacagcccacgtccaccccgactctcaaccagctcctaacttccccg
agctccagccggggttacccgaattacccccagagcgactacaacaaccaggaaggtgct
aacaagggaccagcggagattggcagtagcggacagtatggtgggggccatccgggttgg
caacaaaggacccatcacccgccgccaatgagcccgggaagtacagggcaacctcttggt
agaaaccaggctccaggcgctatggatcagattggaaaaatacgaggtcagccatatgga
gcaggcagcccttactctcagcagccccatcaagggcctccagggccacaacagggacct
gcctatccaggccagggctatgggcctcctggtcctcaaagataccccatgggcatgcaa
gggcgcatgcagtatggccagcagatggcctcatacggacagcagggaccaggcgggtat
ggacagcaggggcagcagccttattatggtcagcagggccagggccccctcactggtcag
cagcagtcatcataccctcagccttcttcaggccagcaaggcaaccaggcaccctactcc
cagcagccccacgcttcacagccatctgcccctcatggacaaggtggctcaccctaccaa
cagtctcacatgccccagcagtcccaggggtcaatgtcaggacctccacaaggtccatct
caatcacagtctccatactctcagcctacggctccacagtccagtcagccgccctacaca
cagcaacaggtgcccccatctcagcctcagcaaccagtcagttcccaggttccaccagga
tcacaggctcagcctaactacccccctggtcaaggtcctcagcagcccccctcacagcag
ccatcgcaaacccccacgcccggctcccagcagcaacccacaggacatggccagatgccg
cagggacagcccacatcatacccccagaatgcttcacagcagcaacaacagcagcagcag
cagcaacagcagacaccttatcagaggtttcctcctcctcctcaggagatttcccaagag
tcattcagctcccagtccagtgctcctccctccagtcaaccagtggcgtcctccaaggct
ggctctgaggacatgcagggcaggccctccagtcttcctgacctctcaggctctattgat
gacctgcccacgggtacagagggagccctcagccctggtgtcagcacatctggagtgtcc
agtagtcagggggagcagagcaacccagcacagtccccgttctctccccacacctcacct
cacctaccaggcattcgtggcccttctccctccccagtcggctcgcccgctagtgccacc
gcatcccgctccggacccctctctccagctgccatgccaggaaaccaaatgcctcctcgt
ccacctagcggtcagtcagacggcatgatgcactctgctataaaccagcctggtggaatg
ggccaggagagaggatttatgcaaaggaaccctcaaatgccgccttatggatctccccag
tctggctctgctctgtcacctcgtcagtcttcgggagctcagatgcatggtgctatgggg
ccttatcaacagaataactcattgggcagctatgggcctcagggtggccaatatggccca
caaggttaccccaggcaaccaggctacggcggcatgccaaacgcaaattacccaggccct
gggatgggcggatctatgaatcctatacctggccaaggaggaggaccatcttttgctggc
atgcctccaggtagaatgccccatggacaaatgggtgctcgtccttatggtcccaacatg
ggccctaatatggcacccaacatggcacccaatatgggcaacatgcctccacaggtggct
tctgggatgtgcccaccaccaggcatgaacaggaaaccacaggaagcagctgccatgcaa
catggggccacaaactccatacacaacaggctgcctggatacccgaatatgtctcctggt
atgatgggctcagggcctccttatgggccctccatgaacaatatgccaggaatgatgaac
acccaggcacagcccttccctatgggtggaaacatgcccaacaacagcagtggcatgtct
cctggtccagaatatggtatggatggcaaaatgaaccaggccccgaagataaataacaag
gtggaggggacacctaaaacggagtccaaatcaaagaagtcaagctcctccacaacaacc
aatgagaaaatcacgcgtttgtacgagctgggctctgagccagagcggaagatgtgggtg
gaccgatacctagcattcatcgaggagaaagccatgggtatgaccaacctgcccgctgtg
ggccgaaggcctctagatctatttcgcctctatgtgtctgtcaaggaaattggaggtctt
acacaggtgaacaagaataaaaagtggagggaacttgctacaagcctaaatgttggtacg
tccagcagtgcagccagctctctgaagaagcagtacattcagtgtctgtatgcttttgaa
tgtaagattgagcgtggagaagacccaccacctgatatcttatctacagagagcaaaaag
aaccagcctaagattcagccaccttcaccagctggatctggctctctacagggtccacag
accccacagtcgacaagcagctctatggctgagagtggagacctgaagcctcctactccc
gcttccacaccacatagtcagatgccctcaatgcaaagtggcaggagcagtgtgaacctt
caggatccatttgctgaaagtaatgacccagccttctccagaagaaacactatgacccct
aactctggctatcagtccggcatgagcactccagaaatgcctactcgcatgggcccttat
gagcccaacaaagacccttttggtggaatgcgcaaagttggtgagcagttcataccaggt
ggacagggtcctaacagcactcttggagagcagttcaatcgtggacaaggaggtccaata
ggcaacatgcccatgggacaaaggcagcagtatccatatgggccaggttatgagagaaga
ccggagtcagggatgggcccagaaggcagcagtatggggcctggagtgccacaaccaaac
atgatcccttccaaccctgatgctgggatgtactcgccaaatcgctatcctccacaacaa
cagcggcatgattcctatggtaatcaatatcctggccagggtgcgcctcctggtggctct
tacccaaatcagcaaccaggaatgtttccacagcagcagtccaactacaaaagaccagga
gagggagcttaccctccagcaaaacgacatcatgacggtgagatgtacagcgggccctac
agtggccagcagcaacagcagcaacctcaggctcctcccactgccccctcatcaggccag
caggatatgtttaaccagtatggtagttcttacccaggatcagaacggcgaccacctggg
caacaaaaccagttcccctttccatttggaagagatcgaatgcagcctgggtctggcccc
aactctcagggctctatgccccctcagatgatgggtagctcaatgcagtctggccctgat
ggtccacagggtgctatgtggcaaggccgaggcgagatgggttattccaactatcctaac
cgacaaggcccccctggaggacctgcacaaggccctggataccatggcatgaatcgatct
gacgaaatgatgtcatcagaacaacgcatgaaccatgaaggacagtggccagggcaacgg
caacccccctacaccccagctgggaccggcccgcccatgaaccgaccattgcagtccaac
taccagtcttcccaatccatgcagaaccacattccgcaggtgtccagccccacaccaatg
ccccgccccatagagagccggacttcccccagtaaatctccttacatgcacagcaacatc
aagatgcagaaggcaggtcccccagtccctgcatcccacataatcccctcatcggtacaa
cctccactgatgagaagagaccctccattccctccaggctctgtggaggcctcccaacct
gttctaaaggcacgcaggcggctcaccatgaaagatattggcacaccagaggcatggaga
gtcatgatgtctctgaaatcaggtcttctagctgagagcacatgggctttagacaccatt
aatatcctactgtatgatgacaacagtatctccaattttaatcttatccagctccctggt
ttcttggaattaatagtggagtatttcaggcgttgcctcattgaaatctttggcattctg
agggaatacgaagttggtgatccaggacagagaactttgttggaccctaatgctctcaaa
aatgaagagcattgtgaggatgaagaaggaccacttattgagggtttggatgattatgaa
acggaagaggaggatgaaggagatgaagacaacttgtcttctgaaccgcaagaacacagt
tcatcagtgcagcctcaaataaaattagaaccgaggacaagtgactcgaagaaagatgaa
gatagtagagtgacagagaaagcatcttctacagagtccaaaacatctgagccacccact
tcagatcttgctgtggctcaggacaaaccaaaacaggccagcaaatttgacagacttcca
ttgaaggtggtaaaaaagaaggacccatttgtggtggactgctctaacaagcttggcagg
gttcaagagtttgacagtggcctggtgcattggagtattggtggcggtgactcaacggag
cacattcagacccattttgaaagcaaaatggatttattgcagccacggaaatggatgctg
accacccaggcttctggaaggaagaaatcagctcagagaagagaaactgaagtaactgca
gtgtactcatctagtctagagcgaagaaaagacaatgaccaaaggacttctcagcagtca
cctacagaaaagccgaaagacgatgtgtctgacgtgaaagaagagaagccctctaattgc
tcggagaatgccccagagtcagcattacaaaaggagaaagataaagagaaggagggatcc
gagagaacgaaccaggagagcagcaagctggctctccccaatatcagctctaccttgcag
agtcagcgctcggtcactgttctagaggatgaacctcacagcaaggatgaagccccacta
atcaccctctctgactggcaggactcgcttgcacgtcgctgtgtttgtgtctccaacatt
gtccgcagtctttcatttatccctggtaatgacttggaaatgtccaagcacccgggactt
ctgctgctactgggccgacttgtgctgcttcatcattggcatcctgagcgtaagcaagcg
cctttaacatacgagaaggaggatgaagcagacgaggacattggtcatggcaaagaagaa
tggtggtgggactgtctggagctgctgcgggagaactgcctcgtcacactggcaaacatc
tcaggccagctggacttctcgatctactctgagagcatctgcctgcctctgcttgacggt
ctactacattgggccgtatgtccgtcggcggaagcccaggatcctttcccgactcttggg
cttaatggggctttatctcctcagagactggtcctggagaccctcagtaaacttagcatc
caggacaataatgtggacctaattttggcgacacctcccttcagtcgattagagaagctt
tttgggaacctggtgcgcctggttggggaaagaaaggtgcctgtatgtcgggagatggct
gtcgtgctgctggccaacctagcccagggggacagtatggcagcccgtgccattgcggta
caaaaaggcagtgtagggaatcttttaggctttcttgaggacagtttagcagccacacag
ttccagcagagccaaggctccctgctgcacatgcagggggcacactttgaaccgaccagt
gtggacatgatgcgtcgggctgctcgggctctgcacgcccttgctaaggtggaggagaac
cactcggagtttacgctctacgagtcacggctactggacctctctgtctcccctcttatg
aactctttagtgtcccatgtcatctgtgatgtactctttctgattggccagtcatga
DBGET
integrated database retrieval system
