Astyanax mexicanus (Mexican tetra): 103022421
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Entry
103022421 CDS
T05042
Symbol
bbs1
Name
(RefSeq) Bardet-Biedl syndrome 1 protein isoform X1
KO
K16746
Bardet-Biedl syndrome 1 protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
amex03037
]
103022421 (bbs1)
Cilium and associated proteins [BR:
amex03037
]
Primary cilia and associated proteins
BBSome
103022421 (bbs1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BBS1
GAE_BBS1
PHTB1_N
Motif
Other DBs
NCBI-GeneID:
103022421
NCBI-ProteinID:
XP_007260786
Ensembl:
ENSAMXG00000020073
UniProt:
A0A8B9H6R3
A0A3B1ITQ8
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Position
17:complement(12560873..12591979)
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AA seq
588 aa
AA seq
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MSSVPMEMKDGAVSSSKWLDAHYDPVANLYTFSSCIALADLHGDGENKLVVGDLGTGASN
MKLKVYRGTGLLSENTLLDLPTGLVSFLMDQHEPRTPAIAVASGPFIYIYKNLRPYFKFT
LPTLEVNPLEQDVWSQAREDMIDPMTLKEMLEGIRDKAEIPLSVRSLRFLMLEPQDMEPY
VNLHKQQPIRRQTVITCIGTLKKNMADEDAVSCLVIGTESQEVYILDPEAFTILSKMSLP
SVPTLMDVTGQFDVEFRITIACRNGNIYILRRDSPKPKYCIELSSHPVGLVRMGKNVVVG
CAQETLHGYTQKGKKLWTTYLPAPVTTMAVLDLPTRGFQAVLVALASCEVHVYRDKNLVS
TIKTPDVVTSICFGRYGREDGTLIMTTKGGGLIVKILKRTAVFDERDSAPGPPIAQSIRL
NVPKKTKLYVDQTMRERENAVAMHRAFQMDLSRMRLAAARAYVKALESSLTPMSASLTEP
LKMNAVVQGLGPTFKLTLNIQNTAASRPVMNLAISFLYDENLYSMKTAFFKIPLLVPGLN
YPIDTFVECLSDKGISDIIKVFVLREGKSAPLLTAHINMPVSEGLALN
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagtccctatggagatgaaagacggtgcagtttccagttcgaagtggcttgat
gcacactatgacccagttgctaatctctacaccttttcttcatgtattgctctggcagac
ttgcatggagatggtgagaacaagctggtggtgggtgacctgggcacaggggcaagtaac
atgaagctgaaggtgtaccgtggcactggactgctgagtgagaacacattgctggacttg
cccactggtctggtgtcttttctaatggaccagcatgagcctcgcactcctgccattgct
gtggcctctggccccttcatctacatctacaagaacttgcgcccctactttaagtttact
ctgcccactctggaggtcaatcccctggaacaggacgtgtggagtcaagctagggaggat
atgattgatccaatgacgcttaaggaaatgttggagggtataagggataaggcagaaatc
ccactatcagtcagatcattacggttccttatgctagaaccacaggatatggagccttac
gttaaccttcacaaacagcaacccattcgcagacagacggttatcacatgcataggaacg
ttgaagaaaaacatggcagatgaagatgcagtcagctgcttggtgattggcacagaaagt
caagaagtttacatcctggacccagaggccttcaccattctctcaaagatgtcccttcct
agtgttcctacattgatggatgtgactggtcagtttgatgtggagttcagaatcacaata
gcctgtcgcaatggaaatatctatatattgcgcagggattccccaaagcctaagtactgc
attgagctgtcctctcatcctgttgggctggtgaggatggggaagaacgtggtggtgggc
tgtgctcaggaaactctgcacggatacactcagaagggtaagaagctgtggacgacatac
ttgcctgcgcctgtcaccaccatggcagtattggacctgcccacacgaggattccaggct
gtcctggtggctctggccagctgcgaggtacatgtgtaccgagacaagaacctagtcagc
accatcaagacgccagacgtggtaaccagtatttgctttggtcgatacggtcgcgaggac
ggcaccctaataatgaccaccaaaggagggggcctgattgtgaagatcctaaagaggaca
gctgtgtttgatgaaagagactctgcccctggtcccccgattgcccagagcattcgactg
aatgtgcctaagaaaaccaagctttatgtggatcaaaccatgagagaacgggagaatgct
gtggccatgcacagagcttttcaaatggacctaagtaggatgaggttagctgcagccagg
gcctatgtcaaagccctggagtccagcctcactcctatgtccgccagcttgacagaacct
ctcaagatgaatgctgtggttcaaggcttaggcccaactttcaaactcactttgaacatc
cagaacacagcagcctcccgccctgtaatgaatctagccatcagtttcctctatgatgag
aatctgtacagcatgaaaacagccttctttaagatccccctactggttccagggctgaac
taccccatcgacacctttgtggagtgccttagtgataaaggcatttctgatatcatcaaa
gtgtttgtgctaagagaagggaagagcgctccactcctcactgcacatattaacatgcct
gtaagtgagggactggctctcaactag
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