Astyanax mexicanus (Mexican tetra): 103022472
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Entry
103022472 CDS
T05042
Symbol
rnf115b
Name
(RefSeq) E3 ubiquitin-protein ligase RNF115
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103022472 (rnf115b)
04121 Ubiquitin system [BR:
amex04121
]
103022472 (rnf115b)
Enzymes [BR:
amex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103022472 (rnf115b)
Membrane trafficking [BR:
amex04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
103022472 (rnf115b)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103022472 (rnf115b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-RING_UBOX
Zn_ribbon_19
zf-ANAPC11
zf-rbx1
zf-RING_5
zf-C3HC4_3
HypA
Motif
Other DBs
NCBI-GeneID:
103022472
NCBI-ProteinID:
XP_007230634
UniProt:
A0A8B9H100
LinkDB
All DBs
Position
3:28526098..28536821
Genome browser
AA seq
308 aa
AA seq
DB search
MAEAAAAAAAPPHRFFCHCCKSEVEPRLPEFQCPRCDSGFIEEVADDSSHLQSDIATDGV
VGSDGIASPFAELWQLLFMERSALLSDPTVSGSESLHGSSAVQTVATHTPEAVRPVAGLE
ELSENSAPEPIPPQHSQRRHSRPDRGPAVEGIVQQFLAGLFTNPGTLNTQPAAWPGTLHS
NPGDYAWGQGGFDAVITQLLGQSEIAGPPPAEKEMISSLPTVHVSSEQAACRLECPVCRE
EYSVGESVRQLPCLHCFHSDCIVPWLQLHDTCPVCRKSLNGEDHSFQSQPAPQETSPIST
EPYRTQHL
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggccgccgccgctgccgccgctcctcctcacaggtttttctgtcactgctgt
aagagtgaagtggagcccaggctgccggagtttcagtgccctaggtgtgactctggcttc
attgaggaggtggcagacgactccagccatttacagagtgatattgctacagatggagtt
gtgggtagtgatggcattgcttcaccattcgctgaactgtggcagctgctcttcatggaa
cgctctgccctcctctccgaccccaccgtctcaggctctgaatcgctccacggaagctct
gctgtgcagacagttgctactcatactccagaggcggtgaggcctgtagctggtctagag
gagctttcggaaaactcagctccagagccaatccccccacagcacagtcagcggaggcac
tctcgaccagaccgaggacctgcagtggagggaattgttcagcagttcttggctggtctg
ttcaccaaccctggtaccctgaatactcagccagcagcatggcctggaacgctgcattca
aaccctggagattacgcttggggacagggaggttttgatgctgtcattacacagttgctg
ggtcagtcggagatcgctggtccaccgcctgcagagaaagagatgatctcatctctccct
accgtccacgtttcctcagaacaggctgcatgtcgtctggaatgtcccgtgtgcagagag
gagtactcggtaggggaatcagtccgacagctgccctgcctgcactgttttcacagtgac
tgcattgtgccttggttacaactgcatgatacttgccccgtctgtcgcaagagtctgaac
ggcgaagatcacagcttccaaagccagcctgcacctcaggagaccagtcctatctccaca
gaaccgtacaggacccagcacctctga
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