Astyanax mexicanus (Mexican tetra): 103022478
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Entry
103022478 CDS
T05042
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X3
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04020
Calcium signaling pathway
amex04080
Neuroactive ligand-receptor interaction
amex04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
103022478 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
103022478 (grin1a)
04082 Neuroactive ligand signaling
103022478 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amex04040
]
103022478 (grin1a)
Ion channels [BR:
amex04040
]
Ligand-gated channels
Glutamate (ionotropic)
103022478 (grin1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
103022478
NCBI-ProteinID:
XP_022532360
Ensembl:
ENSAMXG00000030727
LinkDB
All DBs
Position
17:46132767..46198962
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AA seq
966 aa
AA seq
DB search
MRLLLLAALFSCSCVRGGCEPKVVNIGAVLSQKRYEQVFKDAVAQANVVYGRDKFKLTAI
SVTHKANAIQMALSVCEDLISSQVYAILVSHPPQSSDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFNQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKTARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHISD
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVLNKQRKIIWPGGETERPRGFQMSTRLKIVT
IHQEPFVYVKPTMQDGTCREEYTPNGVLIKKVICTGPNETIPGRPIVPQCCYGFCVDLLI
KLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGLADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
AAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDNKESSGGQVAGAAGTPSLPS
SSVETQDDRKSGRAESDPKKKPSFRSISTTLASSIKRRRSSKDTQYPPTDITGQLNLSDP
SVSTVV
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgctcctgctggcggcgctattctcctgctcgtgcgtgcgcggaggctgcgag
cccaaggtggtgaacatcggggccgtgctgagccagaagaggtacgagcaggtgtttaag
gatgcggtggcccaagcgaacgtggtgtacggcagggacaagttcaagctgaccgccatc
tccgtcacgcacaaggccaacgctatacagatggcgctgtccgtgtgcgaggacctcatc
tccagccaggtctacgcgattttggtgagccatcctccccagtccagcgatcacctcaca
cccacgccggtttcctacaccgctggattctaccgcatccctgtggtcggcctcaccacc
aggatgtccatttactctgataagagcatccacctgtccttcctgcgcaccgtgcccccg
tactcgcaccaggcgcacgtctggttcgacatgatgcgcgaattccgctggaaccacatc
atcctgatagtcagcgacgaccacgagggacgggcggcccagaagagactggagacgcta
ttggaggagagagagaccaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacccaaggccgagaaagtcctccagttcaaccaagagactaac
ttaactgccctgctgctggaggccaaagagctggaggctcgggtgatcattctttcagcc
agtgaagaggacgctgctgccgtctacaagacagcacgctttctcaacatgaccggctcg
ggatacgtgtggctggtgggagagcgggagatgtccggtaaagctctgagtgaagctcca
gacggactgatcggcctccagctcatcaacgggaagaacgagtcggcgcacatcagcgac
gccgtggcggtggtggctcagtccatccaggagctgttcgagaaggagaacatcactgag
ccgccgcgaggctgcgtgggaaacaccaacatctggaagactgggccgctctttaaaagg
gtgctgatgtcatccaaatacccagaaggcctcacagggcgtgtggagtttaatgacgat
ggagaccggaagtacgcccattacagcatcctgaactaccagaagagcagactgatccaa
gtcggaatttataacggcactcaggtggtgctgaacaaacagaggaagatcatctggcct
ggaggagagacagagagacccaggggtttccagatgtctacgaggctaaaaatagtgacc
atacatcaggaaccattcgtgtacgtgaaaccgaccatgcaggacgggacctgcagggaa
gagtacacgcccaacggagtcctaattaaaaaggtgatctgcactggaccaaatgagacc
atcccaggacgcccaatagtgcctcagtgctgctacgggttctgcgtggacctgctgatt
aagctggccatgaccatgaacttcacgtacgaggtgcacctggtggctgatgggaaattc
ggcactcaggagagagtgaacaacagcaacaagaaggaatggaacggcatgatgggagag
ctcctgagtggccttgcagacatgattgtggctccgttgaccataaacaatgaacgagct
cagtacatagaattctccaaacccttcaagtaccagggactcactatcctcgtgaaaaag
gaaatcccgcgcagtacactggactcgttcatgcagccgttccagagcacgctgtggctg
ttggtgggtctgtcggtgcatgtggtggcggtgatgctttacctactagaccggttcagc
ccgtttggaaggtttaaagtaaacagtgaagaagaagaagaagatgccctcaccttatct
tctgctatgtggttctcctggggagtgttgctgaactctggaattggagaaggcgccccg
cgcagcttctcagcgagaatcttgggcatggtgtgggctggctttgctatgatcattgta
gcttcctatactgccaacctggctgccttcttggtgttggaccggcctgaggagcgcatc
accggcatcaacgacccaagactgaggaacccatcggacaagttcatctacgccacagtg
aagcaaagttcagtggacatctacttccggcgccaagtggagctgagcaccatgtaccgc
cacatggagaagcacaactacgagagcgccgccgaggccatccaggccgttcgggacaac
aagctgcatgctttcatctgggactctgcggtgctggagtttgaagcctcgcagaagtgc
gacctggtgaccacgggagagctgtttttccgttcgggctttggcataggcatgcgcaag
gacagcccctggaaacagaatgtgtccctggctattctcagttcccatgagaatggcttc
atggaggacctggataaaacctgggtgagataccaggagtgtgactcaaggagcaatgcc
ccagccacactcacctttgagaacatggcaggtgtcttcatgctagtcgctggtggcatt
gcagcagggatcttcctcatcttcatcgagatcgcgtacaagcggcacaaagacgcccgc
aggaagcagatgcagctagccttcgcggccgtcaacgtctggaggaagaacctacaggac
aataaggagagttctggtggtcaagttgcgggcgcagctgggactccatctttaccctct
tcctctgtagagactcaggatgataggaaaagtggtagagcagagtccgaccccaaaaag
aaaccctcttttaggtccatcagtaccaccctggcctccagcatcaagagacgtaggtcc
tccaaagacacgcagtacccacccacagacatcacgggccagctcaacctgtccgacccg
tcggtcagcactgtggtgtga
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