Astyanax mexicanus (Mexican tetra): 103022834
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Entry
103022834 CDS
T05042
Symbol
tmc1
Name
(RefSeq) transmembrane channel-like protein 1
KO
K21988
transmembrane channel-like protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
amex02000
]
103022834 (tmc1)
03037 Cilium and associated proteins [BR:
amex03037
]
103022834 (tmc1)
Transporters [BR:
amex02000
]
Other transporters
Pores ion channels [TC:
1
]
103022834 (tmc1)
Cilium and associated proteins [BR:
amex03037
]
Other cilia and associated proteins
Stereociliary proteins
103022834 (tmc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Piezo_TM1-24
Motif
Other DBs
NCBI-GeneID:
103022834
NCBI-ProteinID:
XP_049326800
Ensembl:
ENSAMXG00000006254
LinkDB
All DBs
Position
22:complement(8111035..8140965)
Genome browser
AA seq
973 aa
AA seq
DB search
MGQTQISTGNEGQVTIYCIDTDGDSHGGGQEMERESKNQKEKKTEKGGATRSRRRRSEER
SEERSESSRDGRKDRRRGGKEGRRRGRQGKEEEIKKDRKNNKNEKAKKQRREEEDEVKEK
EKTEEKKKTKKKNKKAEDEEMNGKKTKKGEQDDQVKEKKEKKKKKKATEIISESEAKSSS
SSSSSEEEEEEEGEKEKVGDEEFVVGSLSPEELERLKEAVDERKKLITTLRGKPWPMRKK
LPTLRESQLFVEKYEGALGKGRGRKLYAYKVMMRKKWMKFERDLENFKTACIPWEMKIKE
IESHFGSSVASYFIFLRWMYGINMILFSLTFGLVMVPEALMGRPYGSIPRKTVPREEQAS
AMDFAVLWDWGGYAKYSVLFYGYYNNQRAVGWLKFRMPLSYFLVGVGTVAYSYMVVIRTM
ARNAKEDGGGDDTSFNFSWKIFTSWDYLIGNPETADNKFASITTSFKEAIVEEQESRKDD
NIHLTRFLRVLANFLVLCCLAGSGYLIYFVVRRSQKFALEGLDNYGWWERNEVNMVMSLL
GMFCPMLFDVISALENYHPRIALQWQLGRIFALFLGNLYTFIIALMDQINLKRAEEEIVK
FNMTAWQANLYNGTIPENSTAPPITVDPADVPRGPCWETMVGQEFVRLIISDTMTTYITL
LIGDFLRAVLVRFLNHCWCWDLEYGFPSYSEFDVSGNVLGLIFNQGMIWMGAFYAPCLPA
LNLLRLHVSMYLQCWAVMCCNVPQERVFKASGSNNFYMAMLLVILFLSTLPAIYTIVSIP
PSFDCGPFSGKSRMFDVIQETLESDFPAWFGKVFSYASNPGLVLPFLLLMVLAIYYLHST
SKTYKHANLELKKKLQAQSEENKKKNKLAAQKAANDLEQAKIMAAAEQQEKEEKQTNNNA
SRREKDSRHSSTGHPVVQGYRNGRGSALSHSQIPPSTRPPAPRVHHYQPGPLPGHPGQPA
SRKQDSSLSSRSR
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaacccaaatctccacaggaaatgagggccaggtcaccatttactgcattgat
acggatggagactctcatggaggaggacaagaaatggaaagagagagcaaaaatcagaaa
gagaaaaagactgaaaagggaggagcaacaagatcaagaagaaggaggtcagaagagagg
tcagaggagaggtcagagtcatccagagatggaagaaaagacagaagaagaggaggcaag
gaggggaggaggagaggaagacagggaaaggaggaggagatcaagaaagatagaaagaac
aacaagaatgaaaaggccaagaaacagcgcagagaagaagaggatgaggtaaaggagaaa
gagaagacagaggagaagaaaaagacaaagaaaaagaacaaaaaggctgaagatgaagag
atgaatgggaagaagacaaagaaaggagaacaggacgaccaagtgaaagagaaaaaggaa
aagaaaaagaagaagaaggcaactgaaataatctcagaatctgaagcaaagtcttcctca
tcatcatcatcctcagaggaggaggaggaggaggagggtgagaaggagaaggttggtgat
gaagagtttgtggtgggctctctgagtccggaggagctggagaggctgaaggaggcggtg
gacgagaggaagaagctcatcaccacactgagaggaaagccctggcccatgcgcaagaaa
ctgcccacactcagggagtctcagctgtttgtagagaagtatgaaggtgctttggggaaa
ggacgaggacggaagctctatgcctacaaggtcatgatgaggaagaaatggatgaagttt
gagagagacttggagaacttcaagacggcctgcatcccatgggagatgaagattaaagaa
attgaaagtcattttggatcttcagtcgcctcctacttcatatttctgagatggatgtac
ggcatcaacatgattctgttcagcctgacgttcgggctggtcatggttcctgaggcactg
atggggcggccttatgggagcattcctagaaagactgtccctagagaggaacaggccagt
gctatggacttcgctgtcttgtgggactgggggggttatgctaagtattcagtcttattt
tatggatactacaacaaccagcgagctgtcggctggctgaagttccgcatgcccctgtcc
tacttcttggtgggggtgggcacggtggcttacagctacatggtggtcattagaaccatg
gcacgcaatgctaaagaggacggtgggggcgatgacaccagttttaattttagctggaag
attttcaccagttgggattacctgattggaaacccggagacagccgacaacaagttcgcc
tccatcaccacaagcttcaaggaagccatcgtcgaggagcaggagagcagaaaggatgac
aacatccatctgacccgcttcctccgcgttttggccaacttcttggttctgtgctgcctg
gcaggaagtggatatctgatctactttgtggtgcgtcggtctcagaagtttgcccttgag
ggtctggataactatggctggtgggagaggaatgaggtgaacatggtgatgtctctgttg
ggaatgttctgtccgatgctgtttgatgtgatcagcgcgctggagaactatcacccccgt
attgctctgcagtggcagctagggcgcatcttcgccctctttcttggcaacctttacact
ttcatcatagcgctcatggaccagatcaacctaaagagagcagaagaggagatagtgaag
tttaacatgacagcatggcaggccaacctgtataacggaaccataccggagaactccact
gctcctccaatcacagtggaccctgcagacgtacccagggggccttgctgggagacaatg
gtgggacaggagtttgtgcgcctgataatatcagacaccatgaccacctacataacgctg
ctgatcggtgatttcctcagagctgtcttggtgcgcttcctcaaccactgctggtgctgg
gacctggagtacggcttcccctcttattcagagtttgacgtgagtgggaacgtacttggc
ctcatattcaaccaaggaatgatctggatgggagcgttttatgccccctgtctgccagct
ctgaatctcctccggctgcacgtgtcgatgtatctgcagtgctgggccgtcatgtgctgt
aacgtccctcaggagcgagtgtttaaagcctccggctccaataacttctacatggccatg
ctgctggtcatcctgttcctgtccacgctgcccgccatctacaccatcgtctccatacct
ccatccttcgactgcggacctttcagtggaaaaagccgaatgtttgatgtgattcaggag
acgctggagtcggacttccctgcctggtttggtaaagtgttcagttacgcctcaaacccg
ggcctggtcctgcccttcctgctcctcatggttctggcgatatattaccttcactccacc
tctaaaacatacaaacatgccaacctggagctgaaaaagaagctgcaggctcaaagtgag
gagaataagaagaaaaataaactggcagcgcagaaagcagctaatgatttggagcaggct
aagatcatggctgctgctgaacagcaggagaaagaggagaaacagaccaataacaatgct
tcccgaagagagaaagacagcagacacagtagtaccggtcaccccgtggtccagggttat
cgtaatggccgaggatctgccctgtctcactctcaaatccctccatccaccagaccccct
gctcccagagtgcaccactaccagccgggaccattaccaggacatcccggacagccagca
tccaggaaacaggacagctcactatccagtaggagcagatga
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