Astyanax mexicanus (Mexican tetra): 103023812
Help
Entry
103023812 CDS
T05042
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
103023812 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103023812 (atrx)
03036 Chromosome and associated proteins [BR:
amex03036
]
103023812 (atrx)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
103023812 (atrx)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103023812 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
103023812
NCBI-ProteinID:
XP_007228484
Ensembl:
ENSAMXG00000013991
LinkDB
All DBs
Position
10:1320644..1367810
Genome browser
AA seq
2138 aa
AA seq
DB search
MSSEARRSSKLNTLVTKLHEFLDHSPEEETAAPQFDEISCGKMASNDSTTNDQIMEKPGC
STEVLKATSRSKRKPAVVTKHVEVHESDSPSESEQACPVDDSNANANANDETFDMDGLPE
DTVVVEPEPVSNEGKDDFKGPEFRNRGSKVKDEVPRRQPDEKLQEIVNCTACGKQVNHFH
KDSVHQHPALKVLICKSCFRYYMSDDISKDEDGMDEQCRWCAEGGNLMCCDYCSNAFCKK
CILRNLGRKELSGIMNEDSKWHCYVCSPEPLNDIVAACEKILQNLECKKKAKVDGEKPKR
ESSKHKPPKTKITAVNGKDVTNSDGSGTLTFSYKMLAVPKELVKKTKKLIETTNGLNSTF
VQFVQQAPSQPGDNIVRYKHLKVFKSVLADLKKVHAALDESLEVEFRDLQVQNGEERGST
DVQNVDNAAVPNSQHVEQSSREKEEGVDSTVDHVPVVPEEDMDGEDVGSADVEMSESPPP
VAETTEKESKESEAKAKVVKCEVEPDREDGSTVAGETSLDKDIVSVPPSVPEELFEMVES
LADCVKKEDEGNSVADADDCKGDNGSVSNDNSEESGKESGRLRKKLVVKLTPVPLKITIK
RDKGKSTSKSEKDEKDGAASPEEGADSRRSPRMKTTPLRKSSEGRSKSKSGASKTKTKNK
DGDGDGAAGGGDKDNDEDNADHKTDKKESDKNEDNEKNEENSPDLPPSSPVDSDSDEVPE
VLRQTEAMEASSDEQKAEPNGKVSGDGDEKRRSLRQTSTKTTAKRKLMKSSSDSDQAAGN
SSKSKKKAAKKKKGKESDSSNHDSDLEKEMKRLSKLGTNRRSSRGGKKKEDEGKKKKKED
EDDEEDEGEKKSEEKSQETEGKKEGKKGPKRLFEKKRRSQRNKGNATKDSSSDEEEEEQA
ADSGEESGDRQKMKPIVDSVVTGIDSFRQSSGDEAETKDEPSQVVDDDDDPENRIAKKML
LAQIKANYSSGDPTSSEDEDGKKEDEKSSKVKDEEDGEKEDEDEDEEETSDSASDADVKK
NGRRHRLLRKKLSLSEGESDEEKPAKAKKEGKRKGRQKVGSDDTDDSDFKRSDSESGSES
ALSEAVSEDEDEGKGNKRKTRSSKKADKERSYQKEKKKKRRRIKVQDSSSSGKSGAEGED
EEGDEDDDDKGTPKGRKKIRKILKDDKLRSETQNALKEEEERRKRIAEREQLREKLRETI
VVEETSQVTCPITTKLVLDEDEETKEPLVQVHRNLVTKLKPHQVDGVQFMWDCCCESVRK
VQKSSGSGCILAHCMGLGKTLQVVTFLHTLLLCEKLNFSTALVVCPLNTVLNWLNEFEKW
QEGLKDEESLEVTELATVKRPQERAFALQRWQEDGGVMIIGYEMYRNLTQGRNIKSKKLK
ETFQKTLVDPGPDFVICDEGHVLKNEASAVSKAMNSIKTRRRVVLTGTPLQNNLIEYHCM
VNFIKENLLGSVKEFRNRFINPIQNGQCADSTMVDVRIMKKRAHILYEMLAGCVQRRDYT
ALTKFLPPKHEYVLSVRMTPVQCKLYRYYLEHFTGVGSALEGGKGRAGTKLFQDFQMLSR
IWTHPWCLQLDYISKENKGYFDEDSMEEFIASDTEESSMSLTSEDEKPKKKKKRGRGRGQ
SSDKSDSDEVEVIKEWNTSTRGGNPEGRNRAEPVEEVRHSNSGPGSPSPDWYKEFVTEAD
AEVLEHSGKIVLLFEILRMAEEVEEKVLVFSQSLISLDLIEDFLELAGRAKEEGKPSPYK
GEGKWFRNIDYYRLDGSTNALTRKKWAEEFNDTNNVRGRLFLISTRAGSLGINLVAANRV
IIFDASWNPSYDIQSIFRVYRFGQVKTVFVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQ
QQIERHFTMNELTELYSFEPDQLDDPSEKKSKRATPMLPKDPFLAELLHSFKDQIVGYHE
HDSLLDHKEEEALSEEERKAAWAEYEAEKKGLSMRFNQPAYSHMGIGAPNSYFPFNVAAL
ASMTNQQLEELINQGRQKVVEATNSLKALPREPLEDVIAKVWKENPKLTEAQVQSMALGR
QASIEMELKHREAVYREVLTKQQTLMMYVQKVIANRKVQEQQMAIARQGLLMNQLALQNG
IAGGMSQMELLGLYQQLGALQGMPGSQMGKNPGPSKGL
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgaggcgcgcagatccagtaagctaaatacattggtgactaaacttcatgag
ttcctggatcattctccagaggaggaaactgctgcaccccaatttgatgaaatctcttgt
ggtaaaatggcttcaaatgactcaaccaccaatgaccaaattatggaaaagcctggctgc
tccactgaagttctgaaggccacttctcgctcaaagaggaaacctgctgttgtgaccaaa
catgtggaggttcatgagtcagactctccgagtgagagtgagcaggcctgccctgtagat
gattctaatgctaatgctaatgctaatgatgaaacctttgacatggatggattaccagaa
gacactgtggtagtagagccagaacctgtcagtaatgaaggaaaagatgacttcaagggt
ccagagtttcggaacagagggagtaaagttaaagatgaggttccacggaggcagcctgat
gaaaagcttcaggagattgttaattgcactgcatgtgggaagcaagtcaatcattttcac
aaagactctgttcatcagcatcctgcacttaaagtcctaatctgcaagtcgtgtttcagg
tattatatgagtgatgatatcagtaaggatgaagatggaatggatgaacagtgcagatgg
tgtgctgagggaggaaacctcatgtgttgtgactactgcagcaacgccttctgcaagaaa
tgcatcctgcgcaacctcgggaggaaggagctctctggaatcatgaacgaagatagcaag
tggcattgctacgtgtgcagcccagagcctctaaacgacattgtcgcagcatgcgagaag
attctccagaacttagaatgtaagaaaaaagccaaggtggacggtgagaaaccgaagcga
gagagttcaaagcacaagcctccgaaaactaaaatcacggccgtgaacggaaaggacgtt
actaattccgatggctcggggactcttaccttttcctacaaaatgttggctgttccaaaa
gaactcgtcaaaaagactaagaaactgatcgagacgacaaacggcttgaacagcacgttc
gtgcagttcgttcaacaggccccaagccagcctggagacaatatcgtcagatacaagcat
ttgaaagtgttcaaatctgtgttagccgacctaaaaaaggttcacgcagctctggacgaa
tcgctggaggtcgagtttcgagaccttcaggtccagaacggagaagagcgtgggtcgaca
gacgttcaaaacgtagacaacgcggcggtccccaactcgcagcatgttgagcagagtagt
agggaaaaagaagagggtgtagatagcactgtggatcacgttccagtggttccagaggag
gacatggacggagaagacgtgggttcagctgatgtagaaatgagcgaaagtcctccgcct
gtagcggagaccacagaaaaagagtcaaaagaaagcgaagccaaagcgaaggtcgtcaaa
tgtgaggttgagccggatcgtgaggacgggtccacagtagctggtgaaacctctctagac
aaagacattgtgtccgtaccaccgtctgtccctgaagaactcttcgaaatggttgagagt
cttgcagattgtgtgaaaaaagaggatgaggggaacagtgttgctgatgctgatgactgt
aagggagataacggctctgtttctaatgacaactctgaggagtctggtaaagaatctggc
cgtttgcgtaaaaaactggttgtgaagcttactcccgttcctcttaaaatcacgattaaa
agagacaaaggcaaaagcacatcaaaatctgaaaaggatgaaaaggatggtgctgcttca
ccagaggaaggtgcagacagcaggagatcccccaggatgaagaccactccactgcgcaag
tcgtctgagggaagaagcaagagcaagtctggtgcttcaaagactaagaccaagaacaaa
gatggcgatggcgatggtgctgctggtggtggtgataaagacaatgatgaagacaatgcc
gatcataagactgataaaaaagagagtgataaaaatgaggataatgagaaaaacgaggag
aatagtccagaccttccaccttccagtcccgtcgactcagactccgatgaagttcccgag
gtccttcgccagacagaagcgatggaggccagctcagacgaacagaaagccgagcccaac
ggcaaggtttcaggcgacggcgacgaaaagagaaggtcgcttcgccaaacgtccacaaag
acgacagcaaaacgcaaactcatgaaaagctcgtcggattcagatcaggctgctggaaac
tcctccaaatccaagaaaaaagccgccaaaaagaagaaggggaaggaatcggactcttcg
aaccacgactcggacctcgagaaggagatgaagcgtctgagcaagctcggcaccaacagg
aggtcgtccagaggaggcaagaagaaggaagacgagggaaagaagaagaagaaggaggat
gaggatgatgaggaggatgagggggagaagaagagtgaagagaagagccaggagactgag
gggaagaaagagggtaagaaaggtccaaagaggttgtttgagaagaaacgtaggtctcag
aggaataaagggaatgctacgaaagattcgtcctctgatgaggaagaggaggagcaggct
gccgactctggagaggagagtggcgatcggcagaagatgaaacctattgtagattctgtc
gtgaccggcatcgactccttccgtcagtcctcaggagatgaagctgagaccaaggatgag
cccagtcaagtggttgacgatgacgatgaccctgaaaatagaattgctaagaagatgctg
ctagctcaaatcaaagccaattactcatctggggatcccacatcctcagaagatgaagat
ggcaaaaaggaggatgagaagtcttcaaaagtgaaggatgaggaggatggagagaaagaa
gatgaagatgaggatgaggaggagacgtcggactctgcttcggacgcggacgtgaagaaa
aacggtcgccggcatcgtttactccgcaagaagctttctctcagcgagggagagtctgat
gaagaaaaaccagccaaggctaaaaaggaggggaaaaggaaaggaagacagaaggtgggg
agtgatgatactgacgattctgactttaagcgttcagattcagaatctggtagcgagtcg
gcgcttagcgaggcggtgagcgaggacgaagacgagggcaagggcaacaagcggaaaact
cggtcttccaaaaaagctgacaaagaaaggagttaccagaaagagaagaagaaaaagcga
cgccgcattaaggttcaggactcctcctctagtggcaagagtggagctgaaggggaggat
gaggagggcgatgaagatgacgacgacaagggaactcccaaggggcgcaagaagatccgc
aagatcctgaaggacgacaagctgcgctctgaaacccagaacgccctgaaagaggaggag
gagaggaggaagcgcatcgcagagagagagcagctcagagagaaactgcgagagacaatc
gttgtggaggaaacgtcacaggtcacgtgccccatcactactaaactggtgctggatgag
gacgaggagaccaaggagccgctcgtccaggtccaccggaacctggtaaccaaactcaag
ccccatcaagtggatggtgtacagttcatgtgggactgctgttgtgaatctgtgaggaag
gttcagaagtcctctggttctggatgtattcttgcacattgtatgggtctgggaaaaacc
cttcaggtggtgacttttctacacaccttgctcctctgtgagaaactcaacttctccaca
gctctggtggtgtgtcccctcaacaccgtcctcaactggctcaacgagtttgagaagtgg
caggagggcttaaaggatgaggagagtttagaggtgacggagctggccactgtgaagaga
cctcaggagagagcgttcgctctgcagcgatggcaggaggacggcggcgtcatgatcatc
ggttacgaaatgtaccgaaacctgacgcagggccgaaacatcaagagcaaaaagctgaaa
gaaactttccaaaagacgctggtcgacccaggcccggactttgttatttgtgacgagggc
catgtgttgaagaacgaagcgtcagctgtgtccaaagccatgaactctattaagacccgg
cgaagagtggtgctgacgggaacgccgcttcagaacaacctgatcgagtatcactgcatg
gtgaacttcattaaagagaacttgctgggttcagtgaaggagttcaggaatcgtttcatt
aaccccatccagaacggtcagtgcgctgactccaccatggtggacgtacgcatcatgaag
aaacgagcacatatcctgtacgagatgttggcgggatgcgttcagaggagagattacact
gccctgactaaattcctgcccccgaagcacgagtacgtgttatcagtgcggatgacgcct
gtgcagtgcaagctgtaccgatactatctggagcactttacaggtgtcggttctgccttg
gaggggggaaaaggccgcgctgggaccaaactcttccaggatttccaaatgctcagcaga
atctggacccatccttggtgtctccagctggactatatcagtaaggaaaacaaggggtac
tttgatgaagacagcatggaggaatttattgcatccgacacggaggagtcctctatgagc
ctcacctctgaggatgaaaagcccaaaaagaagaagaaaagagggagaggtagaggccag
agttcagataaatccgatagtgatgaggtggaggtgattaaggagtggaacaccagcact
cggggaggaaacccggaaggtcgtaatagagccgaacctgtggaggaggttcgtcacagt
aactcgggccccggcagcccctctccggactggtataaggagtttgtgactgaagcagat
gctgaggtgctggagcactcgggaaagatagttctcctgtttgaaattttgcggatggct
gaagaagtagaggaaaaagttttggtgttcagtcagtcactgatttcactggacctcatt
gaggactttctggaattggcaggaagagccaaagaggagggaaaaccctctccatacaaa
ggtgagggcaagtggttcagaaacatcgactactaccgtctggacgggtccactaacgcc
ctgaccaggaagaaatgggctgaggagttcaacgacaccaacaatgttcggggtcgtctg
ttcctcatatccacaagagccggatctctggggatcaacctggtggcggcgaacagggtc
attatcttcgatgcctcgtggaacccgtcgtacgacattcagagtattttcagggtgtac
cgctttggccaggtgaagacggtgtttgtctacaggtttttggctcagggaaccatggag
gacaagatttacgacaggcaggtgaccaaacagtccttgtcgttccgagtggtggatcag
cagcagatcgagcgccacttcaccatgaacgaactgactgaactctacagctttgagcct
gaccagctggacgacccctcggagaagaaaagcaagagggccacgcccatgttgcccaag
gacccgtttctggctgagcttcttcatagctttaaagaccagatcgtgggctaccatgag
catgattccctgctggaccacaaagaggaggaggctttgagtgaggaggagcgtaaggct
gcctgggcggagtatgaagcagagaaaaagggtctctccatgcgcttcaaccagccggcg
tactctcacatgggcataggcgcaccgaattcctacttccccttcaacgtggcggcgctg
gcctccatgaccaaccaacagctggaggagctgataaaccagggccggcagaaggtggta
gaggccaccaattccctgaaggctttgccccgagagcctctggaggacgttatagcgaaa
gtgtggaaggagaaccccaaactgacggaggcccaggtgcagagcatggctctgggcaga
caggccagcatcgagatggagctcaagcacagggaggccgtgtaccgagaagtgctcacc
aagcagcagacgctgatgatgtacgttcagaaggtgatcgctaaccgtaaggtgcaggag
cagcagatggccatcgctcgtcagggtctgctgatgaaccagctggccctgcagaacggc
atcgccgggggcatgagtcagatggagctgttggggttgtaccagcagctgggtgccctc
cagggtatgccaggctcccagatgggcaagaacccaggtccctcaaaaggcctgtag
DBGET
integrated database retrieval system
