Astyanax mexicanus (Mexican tetra): 103023906
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Entry
103023906 CDS
T05042
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103023906 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103023906 (supt5h)
03019 Messenger RNA biogenesis [BR:
amex03019
]
103023906 (supt5h)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103023906 (supt5h)
RNA polymerase I system
103023906 (supt5h)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
103023906 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW7_SPT5
KOW5_SPT5
KOW2_Spt5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
DUF150_C
Motif
Other DBs
NCBI-GeneID:
103023906
NCBI-ProteinID:
XP_007246049
Ensembl:
ENSAMXG00000009128
UniProt:
A0A8T2L2P0
W5KPA1
LinkDB
All DBs
Position
18:17315804..17334890
Genome browser
AA seq
1082 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSEAEEAEENEEEEARSITGSDKAAEEEGEDLEEDEEEYDEEEE
EDDDRPRKKPRHGGFILDEADVDDEYEDEDQWEEGAEDILEKEEAEVSNIDHVALDEDHS
GSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAIALMRKFIAYQCTDTPLQIKSVVAPEHVKGYIYIESYKQTHVKSAIE
GVGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQ
NTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPPQRLFDAEKIRSLGGEVSHDGDFMI
FEANRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTETAGKEREHNL
QSGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKV
IAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELI
QLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
GFAPMSPRISSPMHPGGGGQMQRGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIGVV
KDATESTARVELHSTCQTISVDRQRLTSVGAKRQGGMTSTHGRTPMYGSQTPMYGSGSRT
PMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDDDYEFGYDDEP
SPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQP
SPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYN
PHTPGSNIDQTSSDWVTTDILVRVKDTFLDGGVVNQTGVIRSVTGGMCSVFLQDTEKVVS
ISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLGKL
EV
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagtgaggacagcgatttttcagacaaccagagtgagaggagcagtgaggct
gaggaggccgaggagaatgaggaagaagaagctcgaagtataactggaagtgacaaagct
gcagaagaagaaggagaagatttggaggaagatgaggaggagtatgatgaagaggaggaa
gaggatgatgacagaccaagaaagaaacctcgacatggaggctttatcttggatgaagcc
gatgtggacgatgagtatgaagacgaggatcagtgggaggaaggagcggaagatattttg
gaaaaagaggaagctgaagtgtccaacattgatcatgtggctttggacgaggatcactct
gggtcccgtaggctgcagaatctctggagagattccagagaggaagccctgggggaatac
tacatgaggaaatatgccaagtcatcaggtggtgaacatttctatggaggatcagaagat
ctgtcggatgatattactcagcagcagttgctccctggtgtcaaggatccaaacttgtgg
actgttaagtgtaagattggtgaggagagagcgactgccattgcgctgatgaggaaattc
attgcgtatcagtgcactgacacgccacttcaaatcaagtcagtggtggctcccgaacat
gtgaaaggctacatctacattgagtcttataaacagactcatgtcaagtctgccatcgaa
ggagtcggcaacctgcgaatgggcttctggaaccaacaaatggtgcccattaaggagatg
actgatgtccttaaagtagtcaaggaagtgaccaatctgaaacccaaatcctgggtccgc
cttaagagaggcctgtacaaagatgacatcgcccaggttgattatgttgagccaagtcaa
aataccatttcactaaaaatgattcctcggattgacctggaccgaatcaaagcaagaatg
agcatgaaagactggtttgctaagaggaagaagttcaagagacctcctcagcggctcttc
gatgctgagaaaatcaggtctcttggtggggaagttagccatgatggagatttcatgatc
tttgaagccaatcgatacagtcgtaaaggctttctctttaaaagctttgccatgtcagca
gtgatcacagatggagttaagccaactctttcagagctggagaagtttgaggatcaacct
gaaggcattgacctggaagtggtgactgaaacagcaggaaaggagcgagagcacaacctg
cagtcaggagacaatgtggaggtgtgcgagggcgagttgatcaaccttcaaggaaagata
ttgagtgtggatggcaacaagataacaatcatgcccaaacatgaggacctgaaggaccca
ttagagtttccagctcacgagttgagaaagtatttccgtatgggtgaccatgtgaaagtt
attgctggccgctatgaaggtgacacgggtcttattgttcgagtggaggagaactttgtc
atcctcttctctgatctcactatgcatgagctcaaagtcttgcctagggacttgcagctg
tgctcagagaccgcctccggcgtggatgcaggaggtcagcatgagtggggagagctgatt
cagttagatccacagactgtgggtgtgattgtccggctagaacgagagacctttcaggtg
ctcaacatgcacgggaaggtattaacagtgcggcatcaggcagtgaacaggcggaaggac
aaccgctttgctgtagctctggactcggagcagaacaacattcatgtaaaggacattgtc
aaagttatagatggaccacattcggggcgcgagggagagattcgacacatcttcaggggg
tttgccttccttcactgtaagaagctggttgaaaatggcggcatgtttgtttgtaagaca
cgccaccttgtcctggctggtggttcaaagcctagagatgtgaccaatttcactgttggt
ggatttgctcccatgagcccacgaattagcagtccaatgcacccaggaggagggggtcag
atgcagaggggaggtggtggaggcggcatggggcgtggccgtggtagacgagacaatgat
ctgattgggcagacagtccgcatttctcaaggaccatacaagggatatattggagtggtg
aaagatgctacagaatcaacagctcgagtagagctccactcgacctgccagaccatttca
gtggatcgccagcgtctgaccagcgttggtgcaaagagacaaggaggaatgacttccaca
cacggacggacaccaatgtatggctcccagacacccatgtatggctccgggtcacgtact
cccatgtatggcagccagacgcccctccacgatggaagccgcacccctcattacggctct
cagactcctctgcacgatggaagcagaacgcctgggcagagtggagcttgggaccccaac
aatcccaacacgccgtcacggccggatgatgattacgagtttgggtatgacgatgagccg
tcaccgtcccctcaaggttatggagggacacctaatcctcagactcctgggtacccagaa
gtgccctcaccacaggtcaacccccagtacaatccacagacccctggaactcctgcaatg
tacaatacagaccaatactctccatatgctgcaccatcgccacaaggctcataccaaccc
agtcccagccctcagagttatcatcaagtggctcccagccctgtgggctaccaaaacacc
cactcacctgccagctaccatcccaccccctcacccatggcctaccaggccagtccgagc
cccagcccggtgggatacagcccaatgactccaggagctccatctccaggtggctacaac
ccccatacccctggctccaatattgaccagacctccagtgactgggtgaccacagacatc
ttggtgcgcgtgaaggacactttcctagacggaggagtggttaatcagacgggcgtcatc
cgcagcgtaactggaggaatgtgctcagtgttcctgcaggacacagagaaggttgtcagt
atctcaagtgaacacctggagcctgtgacaccaaccaaaaacaataaggtgaaggtgatt
ctgggagaagaccgggaggccacaggtgtcctgctcagtatcgacggagaggatggcatc
gtccgaatggagctggatgagcagctcaaaattcttaatcttcgcttccttggaaaacta
gaagtgtga
DBGET
integrated database retrieval system
