Astyanax mexicanus (Mexican tetra): 103025218
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Entry
103025218 CDS
T05042
Symbol
cdhr5b
Name
(RefSeq) cadherin-related family member 5 isoform X1
KO
K16505
cadherin-related family member 5
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amex04515
]
103025218 (cdhr5b)
Cell adhesion molecules [BR:
amex04515
]
Cadherins
Cadherin related
103025218 (cdhr5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
DUF6039
Chordopox_A13L
Motif
Other DBs
NCBI-GeneID:
103025218
NCBI-ProteinID:
XP_007235260
Ensembl:
ENSAMXG00000016572
UniProt:
A0A8B9GSI3
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Position
2:47725205..47754884
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AA seq
742 aa
AA seq
DB search
MDLKHLNLTLRTAFCLLVVFSINASGQLCTTETNSPVFKENNTIGQVVAEITVQDGVTMN
IITNPEEAFGLNGTNLVAVKVLDYETLDNNILLVEIQCTRPGETSPLLRIIVTVEDINDN
PPVFAQSHYQLEVPELSPIGTSVEKIEATDLDKFPLNYTLHSPMGEFRLQSYLNPLILVN
KNLDYDTTPEVTLMLYVEDSPPPVHTASATITVTITDINNRPPWFQPCTETLIGISKICL
NTGYQGTVNLTEQATEALTLEPGPVHAIDGDKGRNDPINYRLLSGNEDGIFSIDPNSGDI
TMLKAVDVAGPIVLTVMAYEQLTPDMFATTTVTLQVVIKSLHPPKFVKSSYEGFISEDAD
VGSMVLESKNSNKPLQVLATDDDFADGKNPSIAYEVVGSNDFRITTEGFILIVRSLAPGT
ADLQMRVADTTNGEFSTASLSVEVTPGVPTTTMDMPTTAKDTITSPEITEMATVTPVTTE
TVTELTKTSFDPVTMTSSSGNTNSLQTDGLPGPGGDFGSEDMAALGATLAVVLLICLVII
GVLVYRVKRNSSDWKKLSEASIFRSTLNGGSAGPKDGVQYINDGFQGDEDKGSLNSKEAA
ELPLPQGPGLKRSVPEELEKQSSAPVPLGLSSSDTSSPPEDSSSLSPSDTTDSEKEVKPI
LTKERRMEDGYKAVWFKQDIDPSVKEEVVIIPDSGEMDVGQEDDDDDDDEEEEEEEGVTG
MNRFARRSGSDSEDEETMTSDL
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaaacatctcaacttaacactcagaacagctttctgtctcctggtcgtgttc
tccatcaacgcttctgggcaactgtgtacaactgaaaccaactccccagtgttcaaggag
aacaacactattgggcaagttgttgctgaaataactgttcaggatggggtgaccatgaat
atcataactaaccctgaagaagcttttggcctaaatggcactaaccttgtggcagtcaaa
gttctggactatgagacccttgataacaacatactgctagttgaaatacaatgcaccaga
ccaggggagacttcgcctcttctacgcattattgttacggtggaagacatcaatgacaat
cctccagtgttcgcacagagccactaccagctggaagtacccgagctgtcaccaattggc
acaagtgttgaaaaaattgaggctactgaccttgataaattcccactgaactacaccctt
cactcccccatgggtgaatttaggctgcagtcatatttaaacccattaatcctggtaaac
aaaaatctggattatgacaccactccagaagtcactcttatgctctatgttgaggattct
ccaccacctgttcatactgcctcagctacaattacagtgacaatcactgacatcaataac
cgaccgccatggttccagccttgtacagaaacccttattggcatctccaaaatctgcctc
aatactggataccaagggacagtcaatctaacagagcaagcgactgaagctttgactctg
gaacctggtccagttcatgccattgatggagacaaaggcaggaatgatccaatcaattac
agacttctttcaggaaatgaggatggtatattcagcattgatccaaacagtggggacatc
acaatgctgaaggcagtggatgtagcaggaccaattgtactgacagtcatggcctatgag
cagctcactccggacatgttcgccaccaccaccgtcacactacaggtggtcatcaagagc
ttgcatcccccaaagttcgttaaatccagttatgagggctttatctctgaagatgcagat
gtgggcagtatggtgctggaaagcaagaacagcaacaaacctttacaagttctggccaca
gatgatgactttgctgatggaaaaaatccaagcattgcttatgaagttgtaggtagcaat
gatttcagaatcacaacagaaggcttcatacttatagtacgatcacttgctccaggtaca
gctgacttacagatgcgtgtagctgatacaaccaatggtgaattcagcacagcctccttg
tctgtggaagtaactccaggggtccctacaaccactatggatatgcccaccacagccaaa
gacacgattacaagccctgaaatcacagaaatggccacagtcactcctgttactacagaa
acggttacagaactaacaaagacctcctttgatccagttacaatgacatcatcttcaggc
aatactaacagtcttcaaacagatggtttgcctggtccaggaggtgactttgggtcagaa
gacatggcagctctgggggccacactggctgtcgtgctgctcatctgcttggtgatcatt
ggcgttctggtgtaccgtgtcaaaagaaacagttcagactggaagaagttgtctgaggcc
agcatcttccgcagcacgctaaacggtggttcagctgggcctaaagacggtgtgcagtac
atcaatgacggcttccagggcgatgaggacaaaggcagcttgaactccaaggaggcagcg
gagttgccccttcctcaggggccagggctgaagcgcagtgtgccggaagaactggagaaa
cagagcagtgcccctgtccctctgggcctaagcagcagtgacaccagctcacctcctgaa
gactccagcagcctgagcccctcagacaccacagacagtgagaaggaggtgaagcccatt
ctcaccaaagaacgacggatggaggacggctacaaagcagtgtggtttaaacaggacatt
gatcccagtgtcaaggaggaagtggtcatcattcctgacagtggagagatggatgtagga
caagaagacgatgacgatgatgatgatgaggaggaggaggaggaggaaggtgttacaggt
atgaataggtttgcacggcgatcaggctcagactcagaggatgaagaaaccatgacttca
gacttgtaa
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