Astyanax mexicanus (Mexican tetra): 103025497
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Entry
103025497 CDS
T05042
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103025497 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103025497 (prpf4)
Spliceosome [BR:
amex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
103025497 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
PRP4
WDR90_beta-prop_4th
Beta-prop_EML
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
DUF7779
EAD10
Motif
Other DBs
NCBI-GeneID:
103025497
NCBI-ProteinID:
XP_049329891
Ensembl:
ENSAMXG00000006756
LinkDB
All DBs
Position
1:18608439..18621698
Genome browser
AA seq
507 aa
AA seq
DB search
MSDEDEAPLVKRSRIFYGSLEEKERERLGREGSSGSGKDAIKAGIEAGNINISSGESLEI
EDRVNERQAEVLAEFERRKRARQITVSTDDAEVKACLRALGEPITLFGEGPAERRERLRN
VLSVVGPDALKKSKKDEEKAKHSQEDSQQTWYHEGPDTLKEARLWLAKYSLPRAVKRLDK
ARAHKEIPESTRTVRQQELHKTLRNLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWNVPDCSLVRTLRGHNTNVGAISFHPQATLTLEESNVNMASCAADGSVKLWSLDSDEP
IADIEGHSVRVSRVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDIDFHP
DGSLAGTSGLDSFGRIWDLRTGRCVMFLEGHLKEIYAINFSPNGFHVATGSGDNTCKVWD
LRRRRCIYTIPAHQNLLSSVKFQPTDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDMSPDGQLIATCSYDRTFKLWVSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgaagatgaagcccctctggtaaaaaggtctcggatcttctatggaagtctt
gaagaaaaggagagggagcgtcttggccgtgagggatcctcaggctctgggaaagatgct
attaaagctggaattgaggctggaaatattaacatctccagtggtgagtcattggagatc
gaggatcgtgtgaatgagaggcaggcggaggtcttggctgaatttgagcgcagaaaaaga
gcccggcagattacagtctctactgatgatgctgaagtcaaagcttgcctgcgtgctctg
ggagaaccgattacactgtttggcgagggccctgctgagagacgagagaggttgaggaac
gtcttgtcagtagtgggtcctgatgccctgaagaaatccaagaaagatgaagagaaagca
aagcattctcaagaggattctcagcagacatggtaccacgagggccctgacaccctgaag
gaggcacgtctatggctggccaagtattcacttcctagggctgtgaagaggttggacaaa
gctcgcgctcacaaagaaattccagagtctacacgaacagtacggcaacaggagcttcac
aagaccctcaggaacctgaacaacttctgcagtcagattggagatgatcgtccaatatcc
tattgccagttcagccctaactccaaactgctggtcactgcctcttggagtggcctgtgc
aaactctggaatgtcccagactgtagccttgttcgtacattaaggggccacaacaccaat
gttggagccattagcttccatccacaggccacgctcactctggaggagtcaaatgtcaac
atggcttcctgtgctgcagatggatctgttaaactgtggagtttggacagtgatgagcct
attgcagacatcgaaggccactcagtcagggtgtctcgtgtagcatggcatccttctgga
cgctttctaggcacaacttgttatgataactcatggcgactgtgggatcttgaggcacag
gaggagattcttcatcaggaaggccacagtaaaggcgtccatgacatagatttccatcca
gatggatcattagcaggaactagtggtctggactcatttggtcgcatatgggacttaagg
actggacgctgcgtcatgttccttgaggggcatctcaaagagatttacgcgatcaacttc
tctccaaacggttttcatgtggccactgggagtggagacaacacatgtaaagtgtgggac
ctgcggaggagaaggtgcatatacacaatccctgctcatcagaatctactgtcttcagtc
aagtttcaaccaacggatggtcatttcttgctgactggtgcttatgacaatacagcgaaa
gtgtggacgcaccctggctggtctcctctaaagaccctggcagggcatgagggcaaggtt
atgggactagatatgtctcctgatggacaactaattgccacctgctcctacgaccgcacc
ttcaaactctgggtttctgaatga
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integrated database retrieval system
