Astyanax mexicanus (Mexican tetra): 103025728
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Entry
103025728 CDS
T05042
Symbol
pif1
Name
(RefSeq) ATP-dependent DNA helicase PIF1 isoform X1
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amex03032
]
103025728 (pif1)
03029 Mitochondrial biogenesis [BR:
amex03029
]
103025728 (pif1)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103025728 (pif1)
DNA replication proteins [BR:
amex03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
103025728 (pif1)
Mitochondrial biogenesis [BR:
amex03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
103025728 (pif1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
PH_LRR1
Pif1_2B_dom
AAA_30
AAA_19
AAA_22
Herpes_Helicase
UvrD_C_2
DEAD
Mg_chelatase
RsgA_GTPase
AAA_7
ABC_tran
AAA_16
PhoH
AAA_5
Motif
Other DBs
NCBI-GeneID:
103025728
NCBI-ProteinID:
XP_049332588
Ensembl:
ENSAMXG00000018102
LinkDB
All DBs
Position
4:complement(55604398..55634885)
Genome browser
AA seq
643 aa
AA seq
DB search
MLRNDELPELQCTVAVERVSASSGHALKRRVARSAAVLLGRDEHEELVLRIHDRSKGHTE
SFMLRDFQLFTRFAKDGKCTVKLEPDGTQVLISDCPPDRLSGFLRTLRIKHEASRDRKPV
SDRVRLKATLPRSFNTISPLQQKDVQKANELRSKVNAPLQLKGLSVRSGLSNKAGGSLQV
KRPRADCDTSPVKALHPNKKPVLTLPVARKLSKEQAAVLDAVLSGKNIFFTGSAGTGKSF
LLKRIVGSLPPKSTYATASTGVAACHIGGTTLHSFAGIGSGSAPLEQCLELAQRPGVLQH
WTGCKHLIIDEVSMVEAQFFDKLEAIARSIRRSTEPFGGIQLIVCGDFLQLPPVTKGKEK
PSFCFQARSWRKCIHANMELTEVRRQTDRAFISLLQAVRVGRVTEEVTTQLLKSANNRIE
RDGILATRLCTHKDDVELTNENKLKQLPGPLRVFEAVDSDPMLVKTIDAQSPVGAVLQLK
VGAQVMLTKNLDVQRGLVNGARGVVVDFLPGNQGLPRVRFLCGAVEVMKRERWMFKAGGG
IYLSRQQLPLKLAWAISIHKSQGMTLDCVEISLARVFESGQAYVALSRARSLEGLRVMDF
DPRVVQANQDVLQFYRKLRKERMLLQSSMSDFVGKSNKENEAW
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaaacgatgagcttccggagctgcagtgcacggtggcggtggagcgtgtgagc
gcctcctccggtcacgcattgaagcgacgtgtcgcgcgctccgccgcagtcctgctgggc
cgagacgagcacgaggagctggtgctgcgcatccacgaccgttccaaaggtcacactgag
agcttcatgctgagagacttccagctcttcacccgcttcgccaaagacgggaagtgcacg
gtgaagctggagccggacggcactcaggtgctgatttcagactgcccacctgaccgcctg
agcggcttcctcaggaccctgcgcataaagcacgaggcctcacgagaccggaagcccgtc
agcgaccgggtcaggctgaaggccacgcttccacgctccttcaacaccatcagccccctg
cagcagaaggacgtgcagaaagcaaacgagctgaggagcaaagtcaacgctcccctgcag
ctgaagggtctctctgtgagatccggcctcagtaacaaagctggaggatctttgcaggtc
aaaagacccagagccgactgtgataccagcccggtaaaagctctccaccccaacaaaaag
cctgttctgactctgcctgtggcgagaaagctcagcaaagaacaagctgcagttcttgac
gctgttttaagtggaaagaacatctttttcactggaagtgcaggtacagggaagtctttc
ctgttgaagaggattgtgggatctctgcctccgaaaagcacgtacgctacagccagcaca
ggagtcgctgcgtgtcacataggaggaacgacgctgcacagttttgcaggtatcggttct
ggttcggctcctctggagcagtgtctggagctggcccagcggcccggtgtcctgcagcac
tggaccggctgtaaacatctcatcatcgatgaagtctccatggtggaggcccagttcttt
gacaagcttgaagccattgccaggtccattcgaaggtccactgagccgtttggagggatc
cagctgatcgtttgtggagattttctccagcttcctccagttactaaaggaaaagagaaa
cccagcttctgtttccaggcgaggagctggaggaagtgcatccacgccaacatggagctg
accgaggttcgccggcagactgaccgcgccttcatttcactcctgcaggcggtccgagtg
ggcagagtcacggaggaagtcaccacccagctcctgaaaagcgccaataaccgcatcgaa
agagacggtatcctggcaacccggctgtgcacacacaaggacgacgtggagctcactaat
gagaacaaactcaagcagttaccaggacccttgcgagtgtttgaggcagtggacagtgac
cccatgctggtgaaaactattgatgctcagagtccggtgggggcagtgctgcagcttaaa
gtcggagcacaggtcatgctcacaaagaatctggacgtgcagagggggctggtgaacgga
gccagaggtgttgtggtcgacttcttacctggaaaccaaggcctcccccgtgtgcggttc
ctgtgtggggcggtggaggtgatgaaacgcgagcgctggatgtttaaggcggggggagga
atttatctcagccgccagcagcttcctctaaaactggcctgggctatctccatccacaag
agtcagggtatgactctggactgtgtggagatctctctggcgcgagtgtttgagagcggg
caggcgtacgtggcgctgtctcgagcccggagtctggagggtctacgcgtgatggacttc
gaccccagagtggtccaggccaatcaggacgtcctgcagttctacaggaagctgaggaag
gagaggatgctcctgcagtcttccatgagtgactttgtggggaagagcaataaggagaac
gaggcttggtga
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