Astyanax mexicanus (Mexican tetra): 103025786
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Entry
103025786 CDS
T05042
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B isoform X1
KO
K06636
structural maintenance of chromosome 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04110
Cell cycle
amex04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
103025786 (smc1b)
04114 Oocyte meiosis
103025786 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103025786 (smc1b)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
103025786 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
103025786 (smc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_23
AAA_29
CBM-like_CFAP184
Motif
Other DBs
NCBI-GeneID:
103025786
NCBI-ProteinID:
XP_022539508
Ensembl:
ENSAMXG00000013098
LinkDB
All DBs
Position
10:4743767..4756625
Genome browser
AA seq
1233 aa
AA seq
DB search
MGFLKQLDIENFKSWRGKQIIGPFKRFNCIIGTNGSGKSNIMDALGFVMGERVSSLRVKY
TKDLIHGANIGRPVSATASVTMRFCSDTGEETSFSRTISGESSDYRVNDRQVTLAKYTGQ
LEKIGIVVKARNCLVFQGAVESLAMMNAKERTKLFEHISNSAELAKDYDTKLTALKKAKE
NTQFHFNRKRAAIAEKKQVFKDKLEAEKFQTVVDEFNESKLHLSLFQLYNNERAIDVVTN
ALREKQEAVAATKSTVDVWDQAVKSRRKEHGRLTRQLQKLEKDIKTQEQILSQQRPQYIK
AKVNTAHHLRKAEEMRAALQKSLKHQAKKEQALQELEQELIELEKAWRAYEREMEAQGAQ
RGEGVQLKEAQLERYKELKELSRKKGALLVQKAEKMHWEVKADREKLEFDKRRKNEVAAN
IKHSQTQLDDLTRRAGKLEDYVITSNKALAEQREQEECLAEELECGRVRMQEVNEELAGV
LSELQNAGIDSQENRRQQKRNEVFDSLHRLYPDVVYGRLVDLCQPIHKKYQLAVTKVFGR
YMNAIVVSSAKVARDCIQFIKEERAEPETFLPIEYLDVNPLNERLREVRGAKMVVDVVQC
SQNAPQLKRVVQFVCGNALVCETLKDARTIAFGGPERRKTVALDGTLFSKSGVISGGSVY
LRSKARRWEDKEMSGLKERKEQLTTELRELMKLRRKEADLKQITAQVLGIQTRLKYTKSE
LEIIRKKNIPACHTEISRQESELSNLESQIMMQTENVQVIESEMMAIQEQVNQMEDMVFL
EFCAEIGVANIREYELDYLRQQEELEQKRLQFETQRTRLTAQLEYEQEQLDKQQKNMSKM
EDSVRKVEDDILAMKEEEERLLAVVDETQSKLSELNEQLVEQKSCVNDAKSELDIKVKGH
REKSSDLVKQQKELISAETALEQQRLCKHNLLLACKIEGQNLTLLSGTLDDISDVQLDSE
SQSTCTLDIYEREAQIVFDYKQLGDRLMSLTTEEEVEEQLATMREKVSSLDKLIQVSKTP
NLKALEKMREVRESFHEVLSAFESSTIISKKCNQEFEQVKAKRFHLFSKCFEHVSVAVNQ
IYKQLCRNDSALAILSAENPDEPYLDGISYNCVAPGKRFMAMDNLSGGEKSIAALALVFA
IHSFRPAPFFVLDEVDAALDNTNIGKVTSYIREQSRENLQIIVISLKEEFYSRSDALLGV
YSEFDDCMYSRLLSVDLTPYPLNDENHREREQI
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgggattcttgaagcagttagacatcgaaaatttcaagtcttggcgaggaaagcagatt
attggcccttttaaacgatttaactgcattattggcacaaacggctcaggtaagtcaaat
atcatggacgcgctgggttttgtgatgggagagcgagtttccagtctccgagtgaagtac
acgaaagaccttatccacggagctaacatcggcagacctgtctcagccacggcctcggtc
accatgcgcttctgctccgacaccggcgaggagaccagcttcagcaggacaatatcaggt
gaatcctcagattatcgtgtaaatgacagacaagtcacactggcaaagtacacagggcag
ctggaaaagattggcattgtggtcaaagccaggaactgtctggtgtttcagggagctgtg
gagtcacttgccatgatgaatgctaaagaacgcacaaagctgtttgagcacattagcaac
tctgcagagttagctaaagattatgacaccaagctgacagccttgaaaaaagctaaagag
aacactcagttccactttaacaggaaacgtgctgcaattgcagagaagaagcaggttttc
aaggacaagcttgaggcagagaaatttcagacggtggtggacgagtttaatgaaagcaag
ctccatctcagcctcttccagctttacaacaatgagagggccatagatgttgttacaaat
gcattaagagagaagcaggaggctgttgctgccacaaagagcacagtggatgtgtgggat
caagctgtcaagtctagaaggaaagagcatggacgccttaccagacagctgcaaaaactt
gagaaggatatcaagacccaggagcaaatcctcagccagcagaggcctcagtacatcaag
gccaaggtgaacacagctcatcacctgcgcaaggctgaggagatgcgagctgccctgcag
aagagcctgaagcatcaggccaaaaaggagcaggcgctgcaggagctagagcaggagctt
attgagctggagaaggcatggagagcttatgagagggaaatggaagcgcagggagcccag
aggggagaaggagtacagctgaaagaagctcagctggagagatataaagagctgaaagaa
ctatccaggaagaagggagctttgttagtccagaaggctgagaagatgcactgggaggtt
aaggctgatagggagaagctggagtttgacaaaagacgaaaaaatgaggttgcggcgaac
attaagcattctcagactcaactggatgacttaaccaggagagcagggaaattggaggac
tatgtcatcacctctaacaaggctctggctgaacagagagagcaagaggagtgcctagcg
gaggagttggagtgtggccgtgtacggatgcaggaggttaatgaggagctggcgggggta
ttgagtgagctgcagaatgctggaattgacagccaggagaaccgccggcagcagaaacgg
aatgaagtcttcgacagtctgcacagactctaccctgatgttgtgtacgggcgcttggtg
gatttatgtcagcccattcataagaaataccagcttgctgtcacaaaggtgtttggccga
tacatgaacgccatagtggtgtcttcagcaaaggtggctcgtgactgcattcagtttata
aaagaggagagagctgagccagagacgttccttcctattgagtatcttgatgtaaacccc
ctaaatgagcgtctaagagaggtgcgaggagccaagatggttgtggatgtggtacagtgc
tcccaaaatgcacctcagctcaagagagtggtgcagtttgtgtgtgggaatgcactggtg
tgtgaaactcttaaagatgcccgcaccattgcttttggtggtccagagcgccgcaagact
gtggctttggatggtaccttgttctccaaatcgggcgtgatatctggtgggtctgtgtac
ttgcgcagcaaagctcggcgctgggaggataaggaaatgagtggccttaaagagcgtaag
gagcagctcactacagaactaagggaactgatgaaactgagaagaaaggaggcggactta
aagcagataacagcccaggttctggggatccagacccgcctcaaatacaccaaatctgag
ttggaaatcattcgtaagaagaacatcccagcctgccatactgaaatttccaggcaagag
agtgaactctcaaaccttgagtcccagatcatgatgcagacagagaatgtacaagtgata
gagagtgaaatgatggccatccaagagcaagtcaaccagatggaggacatggtgttctta
gaattctgtgctgagattggggtggccaacatacgcgaatatgaactggactacctgaga
cagcaagaggagcttgagcagaaacggctacagtttgagacccagcgcacaagactcacg
gcacagctggagtatgagcaggagcaactggacaaacagcaaaaaaacatgagcaaaatg
gaggattcagtcaggaaagtagaagatgatatccttgccatgaaggaggaagaagagagg
cttttggctgttgtggatgaaactcagtccaagctctcggagctgaatgaacagctggtt
gaacagaagtcctgcgttaatgatgctaaatctgagctagacataaaagttaaaggtcat
cgggagaagtctagtgacctggtgaagcaacagaaggagctcatctctgcagagacagca
ctggagcagcaaaggctgtgtaagcacaaccttctgctggcctgcaaaattgaaggccaa
aatctcactctgctctcaggaacattggatgatatcagtgacgttcagctggattctgag
tcccagagtacctgcacactggatatctatgagcgtgaggcacaaatcgtctttgactac
aagcagctgggagacagactaatgagtctgactactgaggaggaggtcgaggaacagttg
gcgacaatgagagagaaagtgtcttccctagacaaactaatccaggtgtccaaaacaccc
aatctaaaagccctggagaaaatgagggaggtgagggagagtttccatgaagttctgagt
gcatttgagtccagcacaatcatatctaagaaatgtaatcaagagtttgagcaagtaaag
gcaaagcgctttcatctcttcagcaagtgttttgagcatgtgtctgttgccgtcaaccag
atctacaaacagctctgcagaaatgacagtgctctggctatcctgagtgctgagaaccct
gatgaaccctacctggatgggatcagctataactgtgtggcacctggtaagagatttatg
gccatggacaatctgtcaggaggagagaaatccattgcagctcttgcactggtgtttgct
atacacagctttcgccctgctccattttttgtgctggatgaagtggatgctgccctggac
aacacaaacattggaaaggtaacaagttatattagagagcaatccagagagaatttacag
atcatcgtcatctcactgaaagaggagttctactcacgctcagatgctctgctgggagtc
tattctgagtttgatgattgcatgtacagccgactcctctctgtggacctcactccatac
cctctgaatgatgaaaatcacagagagagggagcagatttaa
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