Astyanax mexicanus (Mexican tetra): 103026001
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Entry
103026001 CDS
T05042
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
103026001 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amex01009
]
103026001 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amex04515
]
103026001 (pcdh20)
Protein phosphatases and associated proteins [BR:
amex01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103026001 (pcdh20)
Cell adhesion molecules [BR:
amex04515
]
Cadherins
Protocadherins
103026001 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
103026001
NCBI-ProteinID:
XP_007228492
Ensembl:
ENSAMXG00000039440
LinkDB
All DBs
Position
10:complement(510283..515754)
Genome browser
AA seq
885 aa
AA seq
DB search
MFLPLKLSSDGAPAAGGGGGGGGGGGGAARREWVQDLGNMNLACLLQRVLLVASVRQIIC
HSLPFSTPEEQVEGIKIGSLSGEYSPPYQLLGGGYLRVDEETGDLFTTEKKIDREALCPS
QEEDRDCTISDDALVGPDQEVVKITVVVEDINDNAPYFETDEIHLKIPEDAAVGTRLLLD
DEARDDDVGSNGEISYHLEEAEGVLLSFFSVALDRSALELVVEKELDREAQDEHRLLLVA
VDGGVSPSLSSTVSLIVSVLDVNDHCPQFSSDHPQTATVPAGASRGTAVCQVQATDRDLG
PNAQISYSFNPQVSEKARALFRLDRVTGEISLAVDVKKLQSSEEHVLKVVAESPHCPAAL
TQVTVYLQPVANLEPSIEIKFVAEYKNQTIVLRENEPPTVLALLELRDTSSIQAVLSLEA
DSVPFTLKEQGGNYLLSTSKPLDFELCSDYRVTVVISEAQGTQIRGRKVIKVAVEDVNDN
APQFQQLHYQAEIEENNKPGVSLIQVRATDADSRLNGEVSYRLIQSPHLFNIDEATGVLS
ASKPLDRERQSAYVLTVLAKDQGSPSLEALVSVSVNVLDLNDNQPTFLNPHFVFFVSESI
PLLAQVGKIGVMDADDGENGKVVDVRVLNKNVPFAVDVSQLSLRCTAEVDREKQDRYEFL
LLATDGGSPPRSSTTSVTVFVEDVNDNCPQVILPSSNLSCFTVSPSTSAGSTITKIYAVD
SDSGMNSDITYQIVGRQPAWPRLFEIDRRSGNITLVGRLAGSDEGMHHLFIVVSDGGKPA
PLNTTVWINLLVNETLEQCHITNIPQYLSQTSEAPVQPPQEPVNEPVQQCTEPPWFILLC
GLGMMVFSVCMFLAATAICLRQKQLMQQRTNSRENHELKLLRLQK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgttcctccctctgaaactcagctcagacggagctcctgcagcaggaggaggaggagga
ggaggaggaggaggaggaggtgcagcgaggagagaatgggttcaggatctgggaaatatg
aacctggcgtgtctgttacagagggtgcttctggtggcatctgtcaggcagatcatatgc
cactcgctgcccttctcgacaccggaggagcaggtggagggaattaagataggctctctg
agtggagaatactcccctccgtaccagctgctgggtggaggatatctgagagtggacgag
gaaacgggggacttgttcaccaccgagaagaaaattgaccgcgaggccttgtgtccatca
caggaggaggacagggactgtaccatctcagacgatgccctggtgggtcctgatcaggag
gtggtgaagatcactgtggttgtggaggatattaatgacaatgctccttattttgaaact
gatgaaattcacttaaaaattcctgaagatgcagccgtggggacaaggctcctattggac
gacgaagctcgggatgacgacgttggcagcaatggagagataagctaccatttagaagaa
gctgaaggagttcttctaagtttcttcagcgtggctctcgacagatctgctctagaactg
gtcgtagaaaaggagttggaccgggaagctcaagacgagcaccgcttgcttctcgtcgct
gtggacggcggcgtctctccgtcactcagctctacggtgtctctcatcgtctcagtgctg
gatgttaacgatcactgcccacagttcagctctgatcatcctcagacagctacagtgcca
gcaggagcatcccgaggaacagcagtctgccaggttcaggccacagaccgtgacctcggc
cccaacgcccagataagctactccttcaaccctcaagtatctgaaaaggccagagccctc
ttccgcttagatcgagtcacaggtgaaatcagcttagctgtggatgtgaagaagctacaa
tcctcagaggaacatgtgctgaaagttgtggcagaaagcccacactgccctgcggcactt
acgcaggtaaccgtatacctgcaaccggtggcaaacctggagccctccatcgagatcaag
tttgtggcagagtataaaaatcaaacaatagtgctacgagagaacgagcccccgactgtt
ttggcccttttggagctaagagacacctcaagcattcaagcagttctgtccttagaggca
gacagcgtgccattcactctgaaagagcaaggaggcaactatctgctttcaacatcaaag
ccgctagactttgaactgtgcagcgactatcgcgttactgtcgttataagcgaagcccag
ggcacacaaatccgtggaaggaaagtgatcaaagtggcggttgaagatgtgaacgataat
gccccacagttccagcagcttcactatcaggcggagatagaggagaacaataaacccggc
gtgtctctgatacaagtcagggcaaccgatgcagacagccgtctcaacggcgaagtgtcg
taccggctgattcagtctcctcacctctttaatattgatgaagcgacgggcgtgctgtct
gcatcaaagcctttggacagagagagacagagtgcgtatgtcctcacggttcttgccaag
gatcagggctccccgtctctggaggccttggtgtccgtgtccgtaaatgtgctggacctg
aacgacaaccagcccaccttcctcaatccacacttcgtcttcttcgtctctgagagcatt
ccacttctagctcaggtggggaagattggagtgatggatgctgatgatggagagaacggg
aaagtggtagacgtgagagttctgaacaagaacgtccccttcgccgtggacgtctctcaa
ctgtcacttcgatgcactgcagaagtggaccgggaaaagcaggaccgctatgagttcctt
ttgctggcgacggatggtggcagtcctccacgctcctcaacaacttcggtgactgttttc
gtggaggacgtcaacgacaactgtccccaagtcatcctgcccagcagcaacctgtcctgt
ttcaccgtgtcccccagcaccagcgcgggaagcaccatcacgaagatctacgccgttgac
tcggactcgggtatgaactcagacatcacctaccagatcgtaggcaggcagccggcctgg
ccgaggctgttcgagatcgaccgccgttcagggaacatcacgctggtggggcgactggcg
gggagcgatgagggaatgcaccacctcttcatcgtagtgagcgatggaggtaaaccagct
cctctcaacaccacagtatggatcaacctgctggtcaatgagacgctggagcagtgccac
atcaccaacattcctcagtacctgtcccaaacctcagaagcaccagtgcagccgcctcaa
gaacccgtcaacgagccggtgcagcagtgcacggagccgccgtggttcatcctgctctgt
ggtctggggatgatggtgttctccgtatgcatgtttctggccgccactgcaatctgccta
cgacaaaaacagctgatgcagcaaagaacaaacagtagagaaaaccatgaactcaagctg
ttaagactacagaaataa
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