Astyanax mexicanus (Mexican tetra): 103026153
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Entry
103026153 CDS
T05042
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103026153 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103026153 (cnot3b)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103026153 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103026153 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
103026153
NCBI-ProteinID:
XP_007258303
Ensembl:
ENSAMXG00000009447
UniProt:
A0A8T2MCZ9
W5KQ46
LinkDB
All DBs
Position
3:complement(29887031..29924675)
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AA seq
915 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTATIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEDLPQVVAT
SPPAHTEDEAFQHSSSTPTSTTSSSPIPPSPATCTTNSEDDKKRGRSTDSEFSQSPVKNG
NPSSFSSSSSSSSSSSSSSSSGASSTSVVSMASMVTIAGGGSSATVGNSLLGSMGGLLPN
SCSYSSAIQQQTQQSQQQQHQPKNAITSQSSLISTPSNNILLPTPTSTSSPPNTSTPSLP
VQPPMGHNSVSSLGHSLGLGLGKSGVTATSGASQMSSLGLSALSVSMNSMGGLLQRSTSA
PYAQAAASGTVTTGLLGPVGANANSTNSSGVVGSVGTNGGISSVSLLGPAPGVTGIGGGV
LGLGSTQAAVQPLPLVPPSPVGGGLTQGISVGVIGSNSGNSGSGSTANVGSAGLPRPPSG
QKQNGGTTYSAIVADSTSDSALNSASQSQNSQASSLNSTTSLPESSFFTASMDSGSSLLG
TMTLPPSSPSPSYSESKPSGGSLLNGPNSYTQAADAIKPPELPSSLKSMAERAAQGSGLE
GELSALHLTGDIFPNSTPPTVPPAAPQPSLSEVNIPPSLGVCPLGPVPLTKEQLYQQAMQ
ESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYL
EGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKE
GFTFEYRYLEDRDLQ
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaattacaaggtgaaatcgatcgatgtctaaaaaaagtagcagaa
ggagtggagcagtttgaagacatctggcaaaagcttcacaatgcagccaacgccaaccaa
aaagagaaatatgaggctgacctcaagaaagagattaaaaagttacagcgccttcgagac
cagattaagacgtgggtggcctccaatgagatcaaagacaaaaggcagctagtggacaac
cgcaaactcatagagacgcaaatggagcgatttaaaatcgtggagcgggaaacaaaaaca
aaagcgtactccaaagagggactcggcctggctcagaaagtagatcctgcacaaaaagaa
aaggaagaggtcggacagtggctcacggcaacgatagacactttaaacatgcaggtggac
cagtttgagagtgaggtggaatcgctctcagtacagacgaggaaaaagaaaggagataaa
gagaagcaggaccggatagaggagctaaagcggttgatagagcggcatcgctaccacatc
cgcatgctggagaccatactgagaatgctggacaatgactcgatacaagttgactcaatc
cgcaagatcaaagacgatgtagagtactacctagactcctctcaggaccctgactttgaa
gaaaacgagttcctctatgatgacctggatctggaggatctgccccaagtggttgccacg
tctccaccagctcacacagaagacgaagccttccagcactccagttccacgccgacctcc
accacctcatcttcccccatccccccatctccagctacttgcactacgaattcggaggat
gacaagaagcgagggcgttccactgacagcgaattcagccagtctcctgtgaaaaatggc
aacccatcatctttctcttcatcctcatcatcatcctcatcctcctcatcctcctcatcc
tcgggagcctcttcaacctcagtggtttccatggcgtccatggtgaccattgccggtggc
gggagctcggcgactgtgggcaacagtctcttgggcagtatgggtggcctccttccgaac
tcttgcagctacagttctgccatccagcagcaaacccagcagagccagcagcaacagcac
cagcctaaaaacgccatcacctcccaatccagccttatctccaccccatccaacaatatc
ctcctgcccacccccacctccacatcgtccccacccaacaccagcacacccagcctcccg
gtgcagcctccaatggggcataattcagtttccagtctgggccacagcctgggcttgggc
ctggggaagagtggcgttacggcgacaagtggtgctagccaaatgtccagccttggcctt
tcagcgctgtctgtttccatgaacagcatgggtgggctcctgcagcgctccacttcagca
ccttacgcccaggctgctgcctccggtacggtgaccaccggcttactgggaccggttggg
gcgaacgccaacagcacaaactctagcggagtggtgggttctgtaggaactaacggaggg
atctcctccgtcagcctgttgggcccggcaccgggtgttacgggtatcggcggtggggtt
ttaggtctcgggtccacacaggctgctgtgcagcctttgcccctggtgccacccagccct
gtgggagggggcctgacgcaggggatcagtgtaggtgtaatcgggagcaatagtggaaac
tccgggtcaggaagcacagcaaatgtgggaagtgctggacttcccaggccaccaagtgga
cagaagcagaacggcggcacaacctacagtgccatagtagcagatagcacatcagactcc
gccctcaacagtgccagccaatcacaaaacagccaagcctcatccttaaattccacaacc
agtctgcctgaatcgtctttcttcactgccagtatggacagtgggtccagccttctgggg
acgatgactctccctcccagttcaccctcaccctcctacagcgagagtaaaccaagtgga
ggcagtctgctcaatgggcctaactcctacacacaggctgctgatgccatcaagccccca
gagctaccgagttctctgaaatcaatggcagaaagggcagctcagggctcaggtttagag
ggagaactctctgcactacatctcactggagatattttccccaactcaacaccccccact
gttcccccagcagcacctcagccttctctgtcggaggtgaacattcctccgtcactgggg
gtctgtcctctaggccctgtccccctcaccaaagagcagctctaccagcaagccatgcag
gagtcagcctggacgcacatgccacacccttccgactcagagaggatcaggcagtacttg
atgaggaacccctgtcccacattgcctttccaccaccaggtgccgccacctcactcagat
tctgtggagttctatcagaggttgtccacagagaccctcttctttatcttctactaccta
gagggcacaaaagctcagtatctggcagccaaggccttgaaaaaacagtcctggaggttc
cacacaaaatacatgatgtggttccaaaggcacgaagagcctaagaccatcactgatgag
tttgagcagggaacatacatttacttcgactatgagaagtggggccagaggaaaaaagaa
ggattcacatttgagtacaggtacctcgaggaccgggacctccagtga
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