Astyanax mexicanus (Mexican tetra): 103026413
Help
Entry
103026413 CDS
T05042
Symbol
clasp1a
Name
(RefSeq) CLIP-associating protein 1a isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103026413 (clasp1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
amex04812
]
103026413 (clasp1a)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
103026413 (clasp1a)
Cytoskeleton proteins [BR:
amex04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
103026413 (clasp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT_EF3_N
HEAT
HEAT_EZ
TOR1L1_N
Sec7-like_HUS
Cnd1
RTP1_C1
MMS19_C
ParcG
HEAT_DAAF5
Paxt-1_C
TAN
Motif
Other DBs
NCBI-GeneID:
103026413
NCBI-ProteinID:
XP_049340580
Ensembl:
ENSAMXG00000003132
LinkDB
All DBs
Position
11:complement(8134190..8213657)
Genome browser
AA seq
1591 aa
AA seq
DB search
MEPNMEYCLTQVLQKDVGRRLQVGQELIDYISDKDKSHDLEQDQTALDKMVDGLATLWVN
SSHFKLALLGLEILSALVTRLQDRFRAQVGTVLPSLIDRLGDAKDQVRDQDQTLLLKIME
QAANPQYMWDRMLGGFKHKNNRTREGVCLCLIATLNVYGAQGLTLSKIVPHICNLLGDPT
SQVRDSAMNCLVEIYRHVGERVRVDLSKKGLPQSRLNVIFARFDEVQRSGNMILSSDKNF
DDEDSVDGGRSSSSSSKGFSSSKRGGNMGSMRRPSSASGPRAAGKEGASAGAVDEEDFIK
AFEDVPAVQIYSSREFEDSFTKIREVLSDDKHDWEHRVAALKKVRSLVLAGASEQEGFLQ
QIRLLEGAFKLSAKDLRSQVVREACITLGHISSVLGNKFDHGAETIMPTLLNLVPNSAKV
MATSGVVAIRLILRRTHYPRLIPIITSNCTSKSVAVRRRCYEFLDLLLQEWQTNTLERHV
AVLTETIKKGIHDADSEARSVARKCYWGFHGHYSREAEHLFQALESTYQKALQSHLKSSD
SIVSLPQSDRSSSSSQESLNRPLSVKSVIGGSMTRSKVVSSRAPSTPGSLQRSRSDIDVN
AAASAKSRLSTTPSPSPFSSAAALPPGSYASLDGTPGKIDGRVRTRRQSSGSAVGANNTV
TDSRGRSRAKVVSQSQRSRSANPTGAGSRSSSPGKLLAHTYGRIPRTTPTATPTDKRTRV
PRSQGCSRETSPSRLGLARLCGKALLPAASPYRTLARSSRIPRPSMSQGCSRDTSRESSR
DTSPARGFTPLASRRHSRSTSALSTADPVGQSDRFGLIHQARISATVNAMRVLNTGTEVE
AAVADALLLGDSRNKRKPVRRRFESPGMFSDDDANSDASSACSERSCSSRNGGIPHYLRQ
TEDVAEVLNHCASSNWSERKEGLLGLQNLLKSQRVLSRVELKRLCEIFTRMFADPHSKVF
SMFLETLVDFVTVHREDLQDWLFVLLTQLLKKMGADLLGSVQLKVQKALDVTRESFPFDQ
QFNILMRFIVDQTQTPNLKVKVAILKYIESLARQMDPGDFVNSSETRLAVSRIITWTTEP
KSSDVRKTLHNWASEDFTGRPSTTALLPGEGNLEERCKQAAQIVLISLFELNTPEFTMLL
GALPKTFQDGATKLLHSHLKNSSNTSGVSSPSNTMGRTQSRHPYSRTSPLTSPTNCSHSG
LSPSMMEYDTENMNSDEIYSSLRGVTEAIQSFSYRSQEDLNEPIRREGKKDDAVGREAAS
PGSDARLGLDVVEGGRTALDNKTSLLNTPSPRAFAGPRTREFAPYGYGDTIGGYDKSALK
EAVFDDDVEQFRDCRRQECGENKMVLSKGFAPDLVADLLKELSNHNERVEERKGALVELL
KITREDSMAVWDEHFKTILLLLLETLGDKDHTIRALALRVLKEILRSQPARFKNYAELTI
MKTLEAHKDSHKEVVRAAEESASTLAGSIHPEQCIKVLCPIVQTADYPINLAAIKMQTKV
IERIAKESLHQLLPDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEELKPHLAQLTGS
KMKLLNLYIKRAQTTTTNSNSSSSSDVSSYS
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaatatggagtactgtttgacacaggtgctacagaaagatgttggccgcagg
ctgcaggtgggtcaggagctcatcgactacatcagcgataaggacaagtcccatgaccta
gagcaggaccagactgctctagataaaatggtggatggccttgccaccttgtgggtcaac
tccagccactttaagttggctcttcttggattggaaatattgtctgccttagtgactcga
ttgcaagaccgctttcgggcgcaagttggaacagttttacctagcttaattgatcggtta
ggcgatgccaaagatcaagtcagagaccaggaccagacgctgctgctgaagatcatggaa
caggctgctaatcctcagtacatgtgggacagaatgctggggggatttaaacacaaaaac
aacaggaccagagaaggagtctgtctatgtctcattgcaacactaaacgtatatggtgcc
caaggtttaaccctaagcaaaattgtaccacatatatgtaatctactaggggaccccaca
agtcaggtgagggacagtgccatgaattgccttgtggaaatatatagacatgttggagag
cgagttagagtggacctcagcaaaaaaggattaccacagtccagattgaatgtgattttc
gccagatttgatgaagtccaaagatctgggaacatgattctctcttcagataagaacttt
gatgatgaggattctgtggacggaggcagatcttcctcttcatcttctaaaggcttctcc
agcagcaagcgaggaggaaacatgggctccatgagacgccccagctcagcctctggaccc
cgtgctgcagggaaggagggagccagtgcaggagccgtggatgaagaggacttcatcaag
gccttcgaagatgttcctgcagtacagatctattccagtagggaatttgaagattccttt
actaagattcgagaggtgctatcagatgacaagcacgactgggagcacagagttgctgct
ctaaagaaagtgcgatcactggttctggctggagcttcagaacaagaaggttttcttcag
cagatcagacttttggaaggtgccttcaagctctctgcgaaagacttgcgctctcaagtt
gtccgggaagcgtgcatcactcttgggcatatttcctcagtgttgggcaacaagtttgac
cacggagcagagaccatcatgcccacgctgctcaatctcgtgcccaacagcgccaaagtc
atggccacatcaggggtggtcgccatccgcctcatcttacggcgtacccactatcctcgc
ctcatccccataatcaccagcaactgcacatctaaatcagtggcagttcgaagacggtgt
tatgaatttctagacctgctgttgcaggaatggcaaacaaatacgttagagaggcatgtt
gctgttctcaccgagaccatcaagaaagggattcatgatgcagactctgaggccagatct
gttgccagaaagtgttattggggattccatggccactacagccgggaggcggagcacctg
tttcaggctctggagtcgacctatcaaaaagccctccagtctcacctaaagagttcagac
agcattgtgtcgctgcctcagtccgatcgttcctcctccagctctcaggagagcctgaac
cgcccactgtctgtgaagagtgtcataggaggcagcatgaccagaagtaaagtggtgagc
tccagagctccctccacgccaggctcccttcagcgctctcgcagcgacatcgacgtaaac
gctgccgccagtgccaagtcccgcttgtccaccacgccttcaccatctcccttcagctct
gctgcagccctgcctccaggatcctacgcctctctggatggtacacctggtaaaatagat
ggtcgagtgcgcacaagaaggcagagctccggcagtgccgttggtgctaacaatacagta
acggacagccgaggccgaagcagagctaaagtagtgtctcagtcccagcgatccagatca
gctaaccctactggtgccggcagccgttccagctcccctggaaagctcctggctcacacg
tatggcagaatcccacggaccactcccacagctacacccacagacaagcgcacaagggtc
ccaagaagccagggatgcagccgagaaaccagccccagcaggctgggcctagccaggctg
tgtggtaaagctcttcttcctgctgcttctccttaccgcacgctagcccggagcagccgc
atcccccgccccagcatgagtcaggggtgcagccgtgacaccagtcgcgagagcagccgt
gataccagccccgctcggggcttcactcctttggcctcccggcgccactctcgctccacc
agtgcgctgtccacggccgaccccgtgggccagtcagatcggtttgggctgatccaccag
gcccggatctctgctactgtgaatgccatgagagttctcaacacagggacggaggttgaa
gctgctgtagcggatgcattgctgttaggagactccaggaataagcgcaaacctgtgaga
cggcggtttgagtctccagggatgttctctgatgacgatgccaacagtgatgcgtctagt
gcctgctctgagcgctcgtgcagctcgaggaacggtggtatcccacactacctgcggcag
acagaggatgttgcggaggtcctaaaccactgtgccagctccaattggtctgagagaaaa
gagggcctgctgggcctgcagaacttactcaaaagccagcgtgtgcttagccgagtggag
ctgaaaaggttatgtgagatcttcaccaggatgtttgcagatcctcacagcaaggtgttt
agcatgttcctggagactctagtagacttcgtcactgttcacagagaggacctgcaggac
tggctctttgtcctgctaactcagttacttaagaagatgggagctgatctcctgggctcg
gttcagttgaaagtgcagaaggctcttgatgtcacccgtgagtccttcccatttgaccag
caatttaatattctcatgaggtttattgttgatcaaacccaaacacccaatttaaaggtc
aaagtagctatcttgaagtatattgagtccctggcaagacagatggaccctggagacttt
gtgaattccagtgagacaagattagctgtgtcccgaatcatcacctggaccacagaaccc
aaaagctctgatgtcagaaagacccttcataactgggccagtgaggactttacaggcagg
cccagcactacagccctgctgcctggcgagggtaacctggaggaaaggtgtaagcaggct
gcccagattgtgctgatctctctgtttgagctgaacacacctgagttcaccatgctcctg
ggagctctgcccaaaacatttcaggatggtgccaccaagcttcttcacagccatttgaag
aactccagcaacaccagtggagtgagttctccaagcaacacaatgggacgcacccagtct
aggcacccatacagcaggaccagccccctcacctcccccacaaactgctctcatagtggg
ctttcacccagtatgatggagtatgacacagagaacatgaattctgatgagatctatagt
tcactacgtggtgtaacagaggccatccagagcttcagctaccgtagccaagaagacctc
aatgaaccgatcaggcgggaaggcaagaaagatgatgcggttggtcgggaggcagcatct
ccaggctctgatgctcggttagggttggatgtagtggagggaggccgcacagcattggat
aataagacgtcgctgctcaacaccccctctcctcgtgcttttgctggaccaaggactcga
gagtttgcaccttacggctacggagacactattggaggttatgataagagtgctttaaaa
gaggccgtctttgacgatgatgtggaacagttccgtgactgccgtcggcaggagtgtggt
gagaacaagatggtgctctccaagggctttgctcctgacctggtggcagacctgctgaag
gagttgtccaatcacaacgagcgagtagaagagaggaaaggagcgctagtggagctgctg
aagatcacacgggaggacagcatggctgtgtgggacgaacacttcaaaaccatcctgctg
ctgctgctagagacactcggagacaaagatcacaccatccgggccctggctctgcgtgtt
ctaaaggagattctaaggagtcagccggcccgctttaagaactatgcagaactcacaatc
atgaagaccctagaagctcataaagactctcacaaggaggttgtgagggctgctgaagag
tccgcttctacgctagcaggttccatccatccagagcagtgcatcaaggttctgtgtccc
attgtgcagactgcagactaccccatcaacttggcagccatcaaaatgcaaactaaagtc
attgaacgcatagccaaggaatccctccatcaactgctgccagacatcattcctggacta
ttacagggctacgacaacactgagagcagcgttcgcaaggccagtgtgttctgcctagta
gccatctactctgtgattggtgaggaactcaaacctcacctggcgcagctgacaggcagc
aagatgaagctgctgaacctgtacataaaaagagcgcaaaccaccaccaccaacagcaac
agcagcagctcctctgacgtgtcgtcctacagttaa
DBGET
integrated database retrieval system
