KEGG   Astyanax mexicanus (Mexican tetra): 103026437
Entry
103026437         CDS       T05042                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:amex00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:amex01009]
    103026437 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:amex03036]
    103026437 (kdm5bb)
Enzymes [BR:amex01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     103026437 (kdm5bb)
Protein phosphatases and associated proteins [BR:amex01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     103026437 (kdm5bb)
Chromosome and associated proteins [BR:amex03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    103026437 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID PHD zf-C5HC2 JmjN zf-PHD-like
Other DBs
NCBI-GeneID: 103026437
NCBI-ProteinID: XP_007231736
Ensembl: ENSAMXG00000018648
UniProt: A0A8B9H3J2
LinkDB
Position
12:complement(47135270..47189011)
AA seq 1538 aa
MSLPRPDEFQPPPECPVFEPSWEEFADPFAFINKIRPIAEKTGICKVRPPPDWQPPFACD
VDRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLYQLNKLV
ADEGGFELVCKERRWTKIAMTMGFAPGKAVGSHLRSHYERVLYPYNLFQSGANLLEQELA
AKLMSFGAAPEQEKFIQNHSLPESDEKEYKPHDLVQRQNTQVPPDASTPSRRAKRMKAES
GCGKSEACAAGGEVCENKPNLRRRMGSFVAKSEPVKEIPIQIKQEPVESKVVQPEPEKTK
PRQKKNTPPPPVSVVDLYVCLVCGNGNDEDRLLLCDGCDDSYHTFCLIPPLTDIPKGDWR
CPKCLAQECSKPQEAFGFEQARRDYSLKAFGEMADSFKSDYFNMPVHMVPTELVEKEFWR
LVRTIEEDVTVEYGADIASKEFGSGFPIRGGRFKVAPHDEKYLSCGWNLNNMAMMDPSVL
THVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQLEA
VMKKLAPELFESQPDLLHQLVTIMNPNTLMSYGVPIYRTNQCAGEFVITFPRAYHSGFNQ
GFNFAEAVNFCTVDWMPLGRQCVDHYRLLHRYCVFSHDEMICNMAAKANKLDVVLASSVH
KDMVLMINEERDLRDQIRKLGVVQCELFEYDLLQDDERQCVKCRTTCYLSALTCPCRPGE
QVCLHHARHLCSCPISNYTLKYRFTLDDLYPMMNAVKQRAESYDVWASHVSEVLEAKLDK
KRNLTVFRSLIEESDKGSFPDNDLLRHLKLVTQDAERCSSVAQQLLTGKRQTRYRIAGGK
TQNQLSVEEMRSFVRQLYNLPCSLTQAPLLKELLNRIEDFQQHSEKVLSDDVSPDLVGEI
QALLDESSEFDVSLPEVSQLRERLELAHWLGAVQRAEDSSSSPRGLSLDGMRRLIDRGVG
LTPHPSTERAMARLQELLTLSEQWEERAQTLLKTRPPESLTSLSATLKEVDSVPTYLPNC
LLLRDSVQRATEWLKEAEALQVGGRVPVLDTLSDMVLRGRAIPVQLEPLERLEALVSEVQ
TWRESAAKTFLMKSSSYTLLEVLCPRCEVGNSVKRKVKKTKGDVMPCGKKRSGRLDSLSD
VEKALSDSKDSASAMATLAEVRVKELESLASLRAANESKLLPSADSGALRVCVCQKAPMG
AMHQCELCRETFHTVCTGGPADPRSAKPWLCPSCHRSPKPPLEKILPLLASLQRIRVRLP
EGDALRYMIERTVSWQRRAREVMASYELSPQSQKHKGSSPSPGQSGADSSGTSQDWSRCS
QEQSVFYIEQRCIPLQGLSADLEELMVEGLLLQVSLPETEQLYTLLLNGPPVQRSPQHTH
SAQHSPQHTPYQSQELASPHRERDSVTSAEKKAKRRIEREELSGLEVPVRERGITKRKKQ
RMSKEKRRERKAASVSASPNYLSDLSPSDDSEEDMILCPAESCRQPAGDEAFLQRWQPRR
TTCASPAARGTWASGGNKEGAERGGERGGWESAEDLED
NT seq 4617 nt   +upstreamnt  +downstreamnt
atgagcctaccgcggccggacgagttccagccgcccccggagtgcccggtcttcgagcct
agctgggaggaattcgcggacccgttcgcctttatcaacaagatccgaccaatcgcggag
aaaacgggaatctgcaaagtccgacctccaccggactggcagcctccgttcgcgtgtgat
gttgacagactccatttcactcctcggatccagaggctgaatgaattggaggcgcagact
cgggttaagcttaattttctcgaccagatcgcaaagttctgggagcttcagggatgcaca
ctaaaaattccacatgtagagcggaagatactagacctttaccagctgaacaagctggtt
gcggatgagggggggtttgagctggtctgtaaggaacgcagatggacgaagatagctatg
acgatgggttttgcccctggtaaagcagttggttcacacctgcgctcacattatgaacgg
gtcctctacccttacaacctcttccagtctggagccaacctgctggaacaagagctagcg
gccaaactgatgagttttggagcagctcctgagcaggaaaagtttatccagaaccactcc
ctgcccgaaagtgatgagaaagaatacaaacctcatgatctggtgcagaggcagaacaca
caggtgcctcccgatgccagcacaccttcccgacgagccaaacggatgaaagctgagtct
ggatgtgggaagtctgaagcatgtgctgcaggaggagaggtgtgtgaaaacaaacccaac
ctgaggaggaggatgggctcattcgtagccaaatctgaaccagtgaaggaaatccccatt
cagattaaacaggagccggtggagagtaaagttgtgcagccggaaccggagaagaccaaa
cctcgccaaaagaaaaacaccccccctccacccgtcagcgttgtggatctgtacgtgtgt
ttagtatgcgggaacggcaacgatgaggataggctgttgctatgcgacggctgtgatgac
agctaccacaccttctgcttgatcccgcccctaaccgacatccctaagggtgattggaga
tgccccaagtgtctggctcaggaatgcagtaagccgcaggaggcgttcggcttcgagcag
gcgcgcagagactactcgctcaaagccttcggggagatggccgactctttcaagtctgac
tacttcaacatgcctgtccacatggttcccacagagctggtggagaaggagttctggcgg
ctggtgcgcactatagaggaggatgtgacggtggagtatggagctgatatcgcctccaag
gagttcggaagcggatttcccatcaggggcggcaggttcaaggtcgcgccgcatgacgag
aaatacctgagctgcggctggaacctgaataacatggccatgatggacccgtcggtgttg
acccatgtgacagctgatatctgtggtatgaccctgccctggctctacgtgggcatgtgc
ttctcctctttctgttggcacatcgaggaccactggagctactccatcaactacctgcac
tggggagaaccaaagacgtggtatggagctcctggttttgctgcagagcagctggaggcg
gtgatgaagaaactcgctcctgagctgttcgagtcacagccggatctgttacatcaactc
gtcaccatcatgaacccaaacacactcatgtcctacggagtaccaatttaccggaccaat
cagtgcgcaggagagttcgtcatcacgttcccacgagcttatcacagcgggttcaaccag
ggctttaactttgccgaggcggtgaacttctgcacggtggactggatgcctctgggtcgt
cagtgtgtggatcactatcgcctgctgcaccgttactgcgtcttctcccacgatgagatg
atctgcaacatggctgctaaagccaataagctggacgtggtgctggcctcctccgttcac
aaagacatggtgctgatgatcaacgaggagagagacctgcgggaccaaatccgcaagctg
ggggtggtgcagtgtgagctgtttgaatacgacttgctgcaagacgacgagaggcagtgt
gtgaagtgccgcaccacctgttacctgtctgccctcacctgtccctgtcgaccgggtgaa
caggtgtgtctgcaccacgctcgccacctgtgctcctgccccatctccaactacacgctg
aagtaccgcttcacgctggatgatctttaccccatgatgaatgctgtgaagcagagggcc
gagtcctatgatgtttgggcctcacatgtctctgaggttctggaggccaaactggataag
aagcgcaacctcacagtgttccgttctctgattgaagagtcagataaagggagttttcct
gataacgatctgttacgccacctgaaactggtcacacaggatgcagagaggtgttcatct
gtggctcagcagcttctaaccggcaagagacagaccaggtaccgcattgctggaggaaag
actcagaatcagctgagcgtggaggaaatgaggtcttttgtccggcagctttacaacctt
ccctgcagcctaacacaggcaccgttactgaaggagctgctgaaccgcattgaggacttc
cagcagcacagtgagaaggtcctgtctgacgacgtcagtccggatctggtgggggagatt
caggctctgctggacgagagttcggagtttgacgttagtttgccggaggtttctcaactg
cgggagcgtctggagctggcccactggctcggcgccgttcagcgggctgaagattcctcc
agcagtcctcgcggcctctcgctggacggcatgcggcggcttatcgaccgcggggtgggg
ctgaccccccacccgtccacggagcgagccatggcccggctacaggagctgctcacgctg
tcggagcagtgggaggagagagcgcagactctgctgaagaccaggcctccggagagcctg
acgtctctctctgccactctgaaggaagtggactctgttcctacatacctgcccaactgt
ctgctgctgcgggactccgttcagagagccaccgagtggctgaaagaggccgaggcttta
caggtgggaggtcgtgttcctgttttagacactctatcagacatggtgctgaggggccgg
gcgattcctgtgcagctggagccgctggagaggctggaggcgctggtgtctgaggtccag
acctggcgggaatcggcagctaaaaccttcctgatgaaaagctcctcctacactttgctg
gaggtgttgtgtccccggtgtgaggtggggaattcagtgaagagaaaggtgaagaagacg
aagggtgatgtgatgccgtgtgggaagaagagaagcgggcgattggacagtctcagcgat
gtagagaaagctctttcagacagtaaagactccgcctccgctatggcgactcttgctgag
gtgcgagtgaaagagctggagtctctggcgtctctccgtgcagctaacgaatcgaagctc
ctcccctcggccgacagcggtgctctcagggtctgcgtgtgtcagaaggctcctatgggt
gccatgcatcagtgtgagctgtgccgggagacgttccacaccgtgtgtaccggggggccg
gcggacccccgcagcgctaagccgtggttatgtccgtcgtgtcatagatcgcctaaacct
ccgctggagaagatcctgccgctgctggcgtctctgcagaggatccgggtgcgcctgccc
gagggagacgcgctgcgctacatgatcgagcgcacggtcagctggcagcggcgggcgcgg
gaggtcatggcgtcgtacgaactctcgccacagtctcagaaacacaagggcagctcgccg
tcaccggggcagtcaggagcagacagcagtggaacgtctcaggattggagcaggtgcagt
caggagcagtctgtcttctacatcgagcagcgctgcatcccactgcagggtctgagtgca
gatttagaggagctgatggtggaaggattattgctgcaggtttcattacctgagactgag
cagctttacacactgctactgaacggccctccggtccagcgcagcccccaacacacacac
tcagcccagcacagccctcaacacacaccctaccaatctcaggaactcgcctcaccacac
cgggagagagacagcgttacctcagcggagaagaaagcaaagcggcggatagagagagag
gagctgagtgggctggaggttccggtgagggagcgagggatcacgaagaggaagaagcag
agaatgagcaaagagaagaggagagagaggaaagcagcgtccgtctcggcgtctccaaac
tacctgtctgacctgtccccgtcagacgactcggaggaggacatgatcctctgcccggcg
gagagctgccggcagccggcgggggacgaggcgtttctgcaaagatggcagccgaggagg
actacgtgtgcgtctcctgcagctcgagggacctgggccagcggcggaaataaagaagga
gcagagagaggaggcgagagaggaggctgggagagcgcggaggacttggaggactag

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