Astyanax mexicanus (Mexican tetra): 103026721
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Entry
103026721 CDS
T05042
Symbol
smc6
Name
(RefSeq) structural maintenance of chromosomes protein 6 isoform X3
KO
K22804
structural maintenance of chromosomes protein 6
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amex03400
]
103026721 (smc6)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
103026721 (smc6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_21
AAA_29
Motif
Other DBs
NCBI-GeneID:
103026721
NCBI-ProteinID:
XP_007252049
Ensembl:
ENSAMXG00000000633
UniProt:
W5JZ87
LinkDB
All DBs
Position
14:17652697..17666700
Genome browser
AA seq
1097 aa
AA seq
DB search
MQGKGIQHISTMNKRKSNVQNVVKPNKTPRTEDTAYVQDEDEDEEEGGVQQEHSVSASSA
GDIGVIESITLKNFMSHHLLGPFQFGPNVNFIVGNNGSGKSAILTALIVGLGGKATTTNR
GASLKSFVKYGESSAEVTVKLRNRGSDSYKGEVYGDCISVEQRITSDGCRTCKIKNKAGH
IISTKKEELTAILDHFNIQVDNPVSILNQEMSKQFLHSKSEADKYKFFMKATLLEQMKRD
YIHIKQTKAVTRDQVERQEECLKDLRQLFLKKKEKYESLSALEKMKQSLEDLKKKMAWCL
VREKEWQVQQLMDEIEKEKNNSVHEEKLLLCQTKVTLADKRVRDIQQKLGKVKEEDEGLA
ETGRKLKEDVKIKSKAQKSQEVVYFRAENKLKQLEKEQCLLQERIHKINNSSVRRNHESE
HSQRIKKMSALKKQLEKLESESTALNQEIKEKQQALFKGREEYDKLSMEEKNIQVSLETK
LKRRNQLTASRSNRLRRFGDRMPELLEAVNRAHAQGRFIKKPVGPIGACISLKDPSLAVA
VESCLRGFMKTFCCDNYKDEKVLQELMSSHFARGSRPQIMVCPFTDSVYNVQHRRVHHPE
FPSVLDILLVDNPVIINCLIDMRSIECILVIKNTAVARRVMQGGRPPRNCREVFTADGDQ
VFTNRCYTPDQEVIVKYLGGDPEAEIRMVQSEVENHQAQLSRFQLHLSSVKQDIQSMEEK
LRGVFMACKRNQETITRVKASITELENIEESQTEDISSLEEDAQENEQKIELERKNVEEA
HAELEQHNKALLELDQKYKDVRNKREKLADETEQLKEDQVKAEAECSKLEQTLKILEKKL
KGHQDNIQSMRVELAAKELEKEDFEEKAKEICPISQIPDRSAKSIDTEITRLREKISSQE
STHGNQEQVIREYAEAHGNYKNKSSQLRDLKRFIDRLDNIMTDRQARYKTLRRSLSVRCK
LYFNNFLIKLHCCGSMMFDHNNETLSISVKPPGQEKDNINDMRSLSGGERSFSTVCFILS
LWEITESPFRCLDEFDVYMDMHNRRISLDLLLELSERQHLRQFIFITPQTTSSLPSSSHI
KIHQLQDPERESEEALP
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgcagggcaagggaattcagcacattagcactatgaataagaggaagtccaatgtccag
aatgtggtcaaacccaacaaaacccccaggacagaggacacagcatatgtccaggatgag
gatgaagatgaggaagaggggggggttcagcaggagcactctgtttctgcctcgagtgct
ggagatatcggtgtaattgagagcatcactttgaagaactttatgagtcaccatttgctc
ggccctttccagtttggaccaaatgtgaattttatcgttgggaacaatggaagtggaaag
agtgctattctcacagcacttattgtgggcctgggaggaaaagcaactacaaccaataga
ggagcatctctgaagagttttgtaaaatacggggaaagctctgcagaagtaacagtaaaa
ttgcgcaacagagggagcgattcttacaaaggcgaagtatatggagactgcatctcagtt
gagcagcggataacaagcgatggttgcaggacttgcaaaatcaagaacaaagcaggtcac
attatctccaccaagaaagaagagttaacagccatactggaccattttaacatacaggtt
gacaacccagtctcaatcctaaatcaggaaatgagtaagcagttcttgcattcaaaaagt
gaagcagataagtacaagtttttcatgaaggcaactctgctagagcagatgaaaagagat
tacatccacataaagcagaccaaagctgtaacacgggaccaagtggaaaggcaggaggag
tgtcttaaagatctcagacagttgtttttaaaaaagaaagaaaagtatgagagtttgtcg
gcacttgaaaaaatgaagcagtctttggaggatctgaagaagaagatggcatggtgtctg
gtaagagagaaggagtggcaagtacagcagttgatggatgaaattgaaaaagaaaagaat
aatagtgtacatgaggaaaagcttctgctctgccagaccaaagttacccttgctgacaag
agagtgcgggatatccaacagaaacttgggaaggtaaaagaggaggatgaaggtctggcg
gaaacaggtcgaaaactgaaagaagatgtcaaaatcaagagtaaggctcaaaaaagccag
gaggtggtgtacttccgtgctgagaataaactgaaacaactagaaaaggagcagtgcctt
cttcaggagagaattcacaaaatcaataatagcagtgtcagaaggaatcatgagtccgaa
cactcacagcggataaagaaaatgagtgctttgaagaagcagctggaaaagcttgagtcg
gagtctacagcacttaatcaggaaatcaaagagaagcagcaggcactttttaaaggaagg
gaagaatacgataagctgagcatggaagaaaaaaacatccaggtctctctggaaaccaaa
ttgaagaggagaaaccagctcacagccagcagatccaataggttgaggcgattcggtgat
cgtatgccagagctgttggaggctgtcaatagagcacatgctcagggacggttcattaag
aagccagttggaccaataggtgcatgcatcagccttaaggatccaagtttagctgtggca
gtggagagttgcttacggggtttcatgaaaaccttttgctgcgacaattacaaggatgaa
aaagtcttacaagaactgatgtcttcccactttgctagaggcagcagaccacagataatg
gtgtgccctttcacagactctgtttacaatgttcaacaccgacgtgtgcaccacccagag
ttcccatcagttttggacatcctcttggttgacaaccctgtgataattaactgcctgata
gacatgaggagcattgaatgtattcttgttatcaaaaacacagctgttgcaaggagagtt
atgcaaggaggaaggcctccaagaaattgtcgggaggttttcactgcagatggcgatcaa
gtgtttaccaatcgctgttacactccggaccaggaagttatagtcaaataccttggtggg
gacccagaggcagaaattcgtatggtgcagtcagaagtggaaaaccaccaggcccagctg
tccaggtttcaactacacttaagttctgtgaagcaggacattcagtccatggaagagaag
ctgcgtggggtttttatggcatgcaaaagaaatcaggaaaccataactcgtgttaaagca
tccataactgaacttgaaaacattgaggaatctcaaacagaagacatcagttctttggaa
gaagatgcacaagaaaatgagcagaagatcgagttagagagaaaaaatgtagaagaggcg
catgctgaactggaacagcacaacaaagctctcctggaactcgatcagaaatacaaggat
gtgagaaataaaagggagaagcttgcagatgaaacggagcagttaaaggaggaccaagtg
aaagctgaggctgagtgcagtaaacttgaacaaaccctcaagatcttggaaaagaaactc
aagggacatcaggataatattcagtccatgagagttgaacttgctgctaaagaattggag
aaggaggattttgaagaaaaagccaaagaaatctgtcctatttctcaaatacccgatcgg
agtgccaagagcattgacacagagatcacgcgactgcgggaaaagatcagctcacaagag
agcacacatggcaaccaggagcaagtgattagggagtatgcagaggctcacggtaattac
aaaaacaaatctagccaattacgagacctgaagagattcattgatcgcctggacaacatc
atgactgacaggcaggctcgatataaaaccctgagaagatccctctctgtgagatgcaag
ttatacttcaacaatttcctaattaagctgcactgctgcgggtccatgatgtttgatcac
aacaatgaaaccctctccatttcagtgaagcctcccggtcaagagaaggacaacatcaat
gacatgcgctctctgtctggtggagaacgctctttctccactgtttgcttcattctgtct
ctgtgggaaatcactgaatcgcccttcaggtgtctggacgagtttgatgtctacatggat
atgcacaatcgtcgaatctcactggatcttcttctggagctctctgaacgccagcatcta
cgacagttcattttcatcaccccacagaccaccagcagtctgccaagcagctctcatatt
aaaatccaccagcttcaagatccagagagagaaagcgaggaggctttgccttag
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