Astyanax mexicanus (Mexican tetra): 103026865
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Entry
103026865 CDS
T05042
Name
(RefSeq) protocadherin alpha-C2 isoform X1
KO
K16493
protocadherin alpha
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
103026865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103026865
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amex04515
]
103026865
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
103026865
Cell adhesion molecules [BR:
amex04515
]
Cadherins
Protocadherins
103026865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
Ig_Cad99C_N
Ig_CLSTN
Cadherin_CELSR2_9th
Ig_GP210_16th
Motif
Other DBs
NCBI-GeneID:
103026865
NCBI-ProteinID:
XP_007237844
Ensembl:
ENSAMXG00000018671
UniProt:
A0A8B9R4H1
LinkDB
All DBs
Position
20:8854801..8959869
Genome browser
AA seq
984 aa
AA seq
DB search
MALAGKCKCSRKDVPILFLVFLYCGLALGQIRYSVPEELDNGAIVGDIVQDLGLDIRKLP
TRKLKVTSDGGKRYVDVNAKNGKLFVAERIDREALCEASSCTLNLDLRLENPSEVHSVEV
EVADANDNAPQFPRDEYQLEISESEITGARFPIEHAQDPDAGTNSIRVYRLSPNEHFALD
SNKPAPNSKHVELVLKKPLDREQAPQHQLVLTATDGGSPALTGSTTISVRVLDSNDNNPV
FDSSVYKVKLLENSPKDTLVIKLNATDQDEGTNGEVFYSFSSYTPERVRQMFSMDTNTGE
IRVRSNVDYEDTNSYEMYIQAMDKGPAAVAAHCKVVVEVVDVNDNVPEIVLSSLSSPVRE
DARADTVVALISVTDRDSGPNKQVTLEIPPGLPFKIKSFRNYYTLVTSAFLDREITAAYN
VTLSATDGGTPPLSSQKTIQVDVADVNDNPPRFEQTSYTVYVMENNAPGASLCTVKAQDA
DVNENARITYTVLNDNNHGIPVTSYVSIKPDTGVAYALRSFDYESLREFHFQVKAQDGGI
PPLSRVATVYIYVMDQNDHPPEIVSPPANGTRSTETVLKNAEAGALVSKVIAYDADAGQN
AWLIYLLDQSTDLDLFKVHEHTGEVRTTRRVLEDNSTSFSLTVLVKDHGEPPMSSTATIN
IAVMEVPPKVIPDPKRIIRPHSTLLFSNVTLYLIIALSATTFVFLVTVVVLAIVRCHAYC
TQPGSCSPCCVSQKSLQESASGGGGGGSQPNNNVVLRRDLKVEPHYIEVRGNGSLTKTYC
YKTCLTATSGSDTFMFYNTGRPISGTWGSERFFTGGSGFVRRLSMPDAAGLQPKGPNADW
RYSASLRAGVQSSVHMEESSAVMQGAQGMLVQNWPTVSSAADGEGEGQLSPPVGAGINSN
SWSFRYGAGPGYGPPQALKPGEIPPEAFIIPGSPAIISIRQDPGALDDKGDFITFGKKEE
AKKKKKKKKEKKEKKDKGKDDGEE
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggctctcgcggggaaatgtaagtgctcgagaaaagacgtgcctattttattcctggtg
ttcctatactgtggccttgcgctcggacaaatacgatattcggttccggaggagctggac
aacggcgcgattgtaggtgacattgtgcaggatttagggctggacatccgaaagctcccc
acccgaaagctcaaggtaacgtctgacgggggcaagcggtacgtggacgtgaacgctaaa
aatggaaagctgttcgtagccgagagaatcgatagggaggcgctgtgcgaagcgagcagc
tgcacattaaatctcgatctgcgtttggaaaacccgtccgaggtgcacagcgtggaggtg
gaggtggcagacgcgaacgacaacgcgccccagttcccgagggacgagtaccagctggaa
atcagcgagtctgagatcacgggagcgcgctttcccatcgagcacgcccaggatcctgac
gccggcaccaattcaatccgcgtttaccggctcagtccgaacgagcatttcgcgctcgac
tccaacaaaccggcccccaacagcaagcatgtcgagctcgtgcttaaaaagccgctggac
cgcgagcaagcaccgcagcatcagctagttttgaccgcgacggacggcggttctccggcc
ctgacaggcagtaccacgatcagcgtgcgcgttttggactccaacgacaacaacccggtg
ttcgacagctcggtgtataaagtgaagctgctcgaaaattcgcccaaagacacgcttgtg
atcaagctgaacgcaaccgatcaagatgagggcactaacggtgaggtgttttattcattc
agcagttacaccccagaaagggtcaggcagatgttcagcatggacaccaacactggagaa
atccgtgtcaggagcaatgtggactacgaggacactaactcgtatgaaatgtatatacaa
gccatggacaaagggccagctgctgttgcagcccattgcaaagtggtggtggaggttgtg
gatgttaacgataatgttccagagattgtgctctcctccttgtcaagcccggtgcgtgaa
gatgcccgtgctgacactgtggtggccttgatcagcgtgacagaccgggactctggcccc
aataaacaggtgaccctggagataccacctggcctgccattcaaaatcaagtccttcagg
aactactacacattagtgacttctgcctttttggaccgtgagatcacagcagcctataac
gtcacccttagtgctactgatggtggcacccctcccctctcgtcccagaagaccattcag
gtggatgtggcagatgtcaatgacaacccaccacgctttgagcagacatcttacactgtg
tatgtcatggagaacaatgcaccaggagcatctctctgcactgtcaaggctcaggatgca
gatgtgaacgagaatgcccgcatcacgtacactgtcctgaatgacaacaaccatggcatt
cccgtcacttcctatgtgtcaatcaaaccagacactggtgtggcctacgccctccgctcc
tttgactatgagtcactgcgagagtttcacttccaggtcaaagcccaggatggtggtatc
cctccccttagtcgtgtagctactgtctacatctatgtaatggaccaaaatgaccatcca
ccagagattgtgagtcctcctgccaatgggacacgctccacagaaacagtgctgaagaat
gctgaagcaggtgcactggtaagcaaggtgattgcatatgatgcagatgctggacagaat
gcctggcttatctatttgctggaccagtccactgatctggacctgttcaaggtgcatgag
cacacaggggaggtacgcaccacacgcagagttctggaagacaactccacctcattcagt
ctaactgtgctggtaaaggaccatggtgagccaccaatgtcttctactgccacaatcaac
atagctgtgatggaggttccacctaaggtcatcccagaccccaagaggatcatccgacct
cacagcaccttgctgttctctaacgtaactctctacctgatcatagccctcagtgctacc
acttttgtattcttggttacagtggtggtgctggccattgtgcgttgccatgcctactgt
actcagcctggttcctgctcaccctgttgcgtgtcccagaaaagtttacaggagagtgct
tctggtgggggtggaggagggtctcaacccaacaacaatgtggtgcttcgccgggatctg
aaagtggagccacattacatcgaggtccgtggaaatggttctctaaccaaaacctactgt
tacaaaacgtgcctaactgccacatctggcagtgacaccttcatgttctacaacaccggt
cggccaataagtggaacctggggatcggagcgcttctttacgggtggcagcggctttgtg
cgcagactaagcatgccagatgcagcaggtttacagcctaagggaccgaatgctgactgg
cgatactctgcatctttgagggcaggagtgcaaagttctgttcacatggaggagtcatca
gctgtgatgcagggggcacagggcatgctggtccagaactggcccactgtgtccagtgct
gcagatggtgaaggtgaaggacaactctctccacctgtcggagctgggatcaacagcaat
agctggagcttccgttatggtgcgggcccaggttacggccccccacaggccctgaagcct
ggggagatccctcctgaagccttcatcatcccaggctccccagccataatctccatccgt
caagacccaggagccttggatgataaaggtgacttcatcaccttcggcaagaaagaggag
gctaaaaagaaaaaaaagaagaagaaggaaaagaaggagaagaaagacaaaggaaaagat
gatggagaagagtag
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