Astyanax mexicanus (Mexican tetra): 103027005 Help Entry 103027005         CDS       T05042                                  Symbol col4a1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism amex  Astyanax mexicanus (Mexican tetra) Pathway amex04510   Focal adhesion amex04512   ECM-receptor interaction amex04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:amex00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     103027005 (col4a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     103027005 (col4a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     103027005 (col4a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:amex04147]     103027005 (col4a1)    00536 Glycosaminoglycan binding proteins [BR:amex00536]     103027005 (col4a1) Exosome [BR:amex04147]  Exosomal proteins   Exosomal proteins of other cancer cells    103027005 (col4a1) Glycosaminoglycan binding proteins [BR:amex00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    103027005 (col4a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  103027005 NCBI-ProteinID:  XP_049341061 LinkDB All DBs Position 11:9030797..9096512 Genome browser AA seq 1630 aa AA seqDB search MRCAGGTLLLAVAVLAGLHQTRAEGCSGSSCGKCDCSGVKGSKGDRGFPGLQGNMGFPGM QGHEGPPGPVGPKGDIGEPGTPGLKGARGPPGAAGFPGNPGLPGLPGQDGPPGPAGIPGC NGTKGERGVDGIPGIHGLQGPPGLPGIQGMKGDPGGIDFIPTKGERGYAGERGVPGSPGD PGQQGPIGPPGPPGPKGYTGPPGPPGPPYNLSFIGAKGEKGEQGPRGPPGRAPEPPYVEG PPVYLQGAKGDKGDQGERCSVYDTGIKGEPGPQGPRGKPGKDGEPGIKGERGDPGFPGDN GYSGEKGERGPPGYGGGPPGPPGPKGFPGPQGEIGFPGQPGERGYPGKNIQGPPGDRGLP GEIGQKGDQGPRGESLRGPQGANGTAGPPGPPGQLSGECNIDRGPPGPPGPPGLQGEIGQ KGDRGDTCTECSSFGPPGLPGAPGPKGNQGFPGTAGGKGDKGQQGLPGSPGNPGRDGPPG LMGAKGAQGEPGDIFLAPNVKGEKGTPGFPGTRGLPGIDGLPGKDGRPGQPGPKGDPARV GIKGDRGEVGDPGLSGPPGERGPPGLPGIGKPGEPGEKGTQGTAGMPGRPGLPGPKGEPG KGVSSPGPQGPPGPRGESGRPGLQGESGTPGDQGLPGFPGDKGDPGLPGIGFPGPPGPKG YSGIPGTPGVPGEPGQPGQDGLPGRPGEPGKKGEPGIGLRGPKGTIGQPGVPGFPGEKGN VGMPGVPGPEGRTGPPGPQGVKGERGPPGTHGLAGPPGPPGPGEPGATGPMGPPGPPGPF GRTGEKGDKGLPGYPGPSTPGPQGEKGSPGFPGIPGPKGLPGDPGRPGQDGFPGERGPKG DMGIMGAPGSQGYQGGPGSPGVSGPRGDPGLTGPRGEIGEQGVKGERGEQGERGPPGNMT DVDMEHMKGEKGDSGDRGDPGPTGSKGATGIDGDPGLAGKDGMPGLPGQPGEKGDPGVPG EPGVPGQPGIKGSIGEMGIPGTGGLKGTKGTIGTPGHRGFKGDEGIKGEKGEHGLPGIGF PGVPGEKGQTGTPGFPGESGQKGVKGTMGIPGSPGTPGQKGDAGQTGYPGNPGVPGEKGV TGLPGSPGDPGLSGRPGEPGLQGPPGPTGQKGESGVDGIPGASGERGDPGVPGRGLPGTP GESGHKGDRGHPGLPGTPGIPGIPGTKGEKGLPGYEGIQGRPGERGLPGPSMEGPKGNTG PQGEPGEPGQTGVPGPAGVPGSPGAKGERGEKGFTGPQGAVGLKGDKGFIGLQGEPGLPG YNGPKGEMGNQGVSGFQGSRGPPGVIGSRGEAGDRGFPGAKGNEGPPGPPGPRTFIKGDI GFPGPQGPPGLPGAQGFPGAKGQQGLMGIQGMKGEDGAPGYNGHPGAKGEPGLIGPSGPR GYPGPPGPDGLPGPAGSPGPSSMDHGFLVTRHSQSIDVPYCPQGTTLIYDGYSLLYVQGN ERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSMAPVTGD SIKPFISRCAVCEAPAMVIAVHSQTVAIPPCPLGWTSLWIGYSFVMHTSAGAEGSGQALA SPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEEMFRKPIPTTLKAGNLRTHI SRCQVCMKRT NT seq 4893 nt NT seq  +upstreamnt  +downstreamnt atgcgctgcgcaggtggcacgctgcttctcgcggtggctgttttggccggtttacaccaa actagagccgaggggtgttctggatcatcatgtgggaagtgtgactgcagtggtgtgaaa gggtctaagggtgacagaggattccctggcttgcaaggcaatatgggatttcctggtatg caggggcacgagggccctccaggaccagtgggaccaaagggagatattggagagcccggc actcctggattgaaaggcgctcgtggacctcctggtgcagctggtttcccaggaaaccct ggtctgccgggtctcccaggtcaagatggcccaccaggaccagcaggtattccagggtgc aatggaacaaaaggagaaagaggtgttgatggaattccaggcatacatggactgcaagga ccaccaggtcttccaggaattcaaggaatgaagggtgatccaggtggtattgattttatt ccaaccaaaggagaaagaggttatgcaggagaacgaggagtgccaggatcacctggagac cctggacaacaaggaccaatcggcccacctggaccaccagggcccaaaggatatactggg cctcccggtccacctggtccaccatataatctcagctttattggtgcgaagggtgagaag ggtgagcaagggcccagaggacctccaggacgtgctccagagcccccttatgttgaagga ccgccagtatatctacagggggctaaaggagacaaaggagaccaaggagaaagatgttca gtgtatgacacaggaatcaaaggtgaaccaggacctcaaggaccaagaggaaagccagga aaggatggagaacctggaattaagggggaaagaggagatcctggtttccctggtgacaat ggctatagcggggaaaagggagagagaggacctccaggatacggtggcggaccacctgga ccccctggtcctaaagggtttcctggacctcaaggagagataggctttcctggacaacct ggagagcgtggttacccaggaaaaaatattcagggtcctccaggagatagaggcttacct ggagagatcggccagaaaggagaccaaggtcctcgtggagagtctctcagaggaccacag ggagctaatggaactgctggtccacctggaccacctggacaattaagtggagagtgcaat attgaccgaggaccaccaggccctcctggacctcctgggctgcaaggagaaatcggacag aaaggtgacagaggagatacgtgcacagaatgttcaagttttggccctccaggtttacct ggtgctccaggaccaaaaggaaatcaaggtttccctggaacagcaggcgggaaaggagat aagggtcagcaaggccttcctggatctcctggaaaccctggtagagatggtcccccaggc ttgatgggtgctaagggagcgcagggtgaacctggtgatatctttctggctccaaatgtg aagggagagaagggcacacccggtttccctggcaccagaggattaccaggtatagatgga cttcctgggaaagatggacgcccagggcaaccaggacctaaaggagatccagctagagta ggcattaaaggagatcgtggtgaagttggagatccaggtcttagcggccccccaggtgag agaggacccccaggtttgccagggattggtaaaccaggagaacctggagagaagggcact caaggaacggctggtatgccaggaagaccaggattaccaggtcctaaaggtgagcccgga aaaggtgtaagttcaccaggacctcagggaccaccaggacctcgtggggagtctggaaga cctggccttcaaggtgaaagtggtactccaggtgatcaaggattgccaggattccccggg gacaaaggtgaccctggccttccaggaattggatttcctgggccaccagggccgaaagga tactctggtattccaggcactcctggagttcctggagaacctggtcagccagggcaggat ggtcttcctggacgtccaggagaaccagggaaaaagggtgaacctggtattggccttcga ggacccaagggtactattgggcaaccaggagtgccagggtttccaggtgagaagggtaat gtaggaatgccaggagtccctggacctgaaggacgtactggcccacctggtcctcagggt gtaaaaggtgaacgaggacctccaggaactcacggtttggccggaccaccaggacctcca ggacctggtgagcctggagcaactggaccaatgggaccccctggaccacctggtccattt ggtcgtaccggtgaaaagggagataaaggtctgccaggttaccccggtccatcaacgcca ggtcctcagggtgagaagggttcccctggatttcctggcattccaggaccaaaagggctc ccaggggatccgggacgtcctggccaagacggattccccggagaaagaggtcccaaagga gatatgggaataatgggagcaccggggtcacaaggttatcaaggtggtccaggaagcccc ggagtgtctggaccaagaggtgaccctggtctgactgggcccaggggagagattggtgag caaggtgtcaaaggagaacgaggagagcaaggagaacgaggaccacctggaaatatgacc gatgtggacatggagcatatgaaaggagagaagggagattctggagacagaggtgatcct ggtcctactggttcaaaaggggccactggaatcgatggagatcctggactggctggaaag gatggaatgcctggattaccaggacagccaggtgagaaaggtgaccctggagttcctgga gaacctggagtacctggccagcctggaattaaaggaagcatcggagagatgggaattcca gggactggaggtttgaagggtactaaaggtacgattggaacacctggacatcgtgggttt aagggagatgaaggcataaaaggtgaaaagggagaacacggtcttcctggaataggattc cctggcgtccctggcgagaagggtcaaacgggtacacctggtttccctggagagtctgga cagaagggagtgaaaggtacaatgggaatcccaggaagtccaggaactccaggacagaaa ggagatgcaggacagactggctatccaggcaaccctggagtaccaggagagaaaggtgtt acagggttacctgggtcaccgggagacccaggtctttcaggacgtccaggtgagcctggt cttcagggtcctccaggaccaacagggcagaaaggagagtcaggagtagatggcattccc ggagcatcaggagagaggggtgatccaggtgtacctggtagaggcttacctggaacgcct ggagagtccggccacaaaggtgacagaggccacccaggtcttcctggtaccccgggaatc ccaggtattcctggaaccaaaggagagaagggcttacctggctacgaggggatccagggc cgacctggagaaagaggattaccagggccgtccatggagggacctaagggcaatacagga cctcagggagagcctggagaaccagggcagactggtgttccaggcccagcaggtgttcca ggaagtcctggagccaaaggagagaggggagagaaaggtttcacaggtccacagggtgct gtgggtctaaaaggtgacaaaggtttcattggacttcagggtgagcctggcctacctggt tataatggaccaaagggtgagatgggaaatcaaggtgtttctggattccaaggatcgagg ggtccacctggagtgatcggttccaggggtgaggctggtgacagaggattccctggagct aaaggaaatgaaggccctcctggacctcctgggccccgtacctttataaaaggagatatt ggcttcccgggaccacagggtcctccaggtctgcctggggctcaagggttccctggagca aaaggacaacaaggactgatgggtatacagggtatgaaaggagaagatggggcacctggg tacaatggacatcctggagcaaaaggagaacctgggcttattggaccttccggacccaga ggatatccaggccccccaggtcctgatggacttccaggtccagctggatctccaggaccc tcttccatggaccatggtttcctagttactcgccacagtcagtctatagatgttccttac tgtcctcaaggcaccactctgatctacgatggatactccctcctctacgtgcaaggcaac gagcgatcgcatggccaagacttgggtacggctggtagctgcctgcggaagttcagtccc atgcctttccttttctgcaacatcaacaacgtgtgtaactttgcctctcggaatgactac tcctattggctcacctctcctgaacccatgcctatgagcatggcccccgttactggtgac agcatcaaaccgttcatcagcagatgtgcagtgtgtgaagctccagccatggtgattgct gtgcacagtcagaccgtggctattcctccctgccctctgggttggacttctctctggatt ggatattcctttgtaatgcacaccagtgcaggtgctgagggatccggtcaggctttggct tctcctggatcttgtctggaggagttccgctcagctcccttcatcgagtgtcacggccgc ggcacctgcaactactacgccaactcctacagcttctggctggccaccatcgaggatgag gagatgtttaggaaacctatcccaactactctaaaggctggcaatctacgaacccacatc agcaggtgtcaagtgtgtatgaagaggacttaa

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