Astyanax mexicanus (Mexican tetra): 103027124
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Entry
103027124 CDS
T05042
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103027124 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103027124 (smarcd2)
03036 Chromosome and associated proteins [BR:
amex03036
]
103027124 (smarcd2)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103027124 (smarcd2)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103027124 (smarcd2)
PBAF complex
103027124 (smarcd2)
GBAF(ncBAF) complex
103027124 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
103027124
NCBI-ProteinID:
XP_049320232
Ensembl:
ENSAMXG00000012109
LinkDB
All DBs
Position
15:complement(21910549..21927774)
Genome browser
AA seq
499 aa
AA seq
DB search
MASRPGFLPNSPAGPGTANPGPPGPPGSVRMAGMPQSTGGYRGLPVPTGQYPRPSMPPSR
NMPMGGMGPMGSPMPGPSYGGSMRPGMPQAALDPVRKRLLHQQAGGLVGPRRGIKRRKMA
DKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKRKLRIYISNT
CTPAKPEGEEAEKVASWELRVEGKLLDDPGKQKRKFSSFFKSLVIELDKELYGPDNHLVE
WHRMPTTQETDGFQVKRPGDVSVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRSSIMQ
ALWLYIKNNKLQDSHEKEYINCNRYFRQIFACHRMRFSEIPMKLAGLLQHPDPIVINHVI
SSVDPNDQKKTACFDIDVEVDDPLKSQMTSFLSSTTNQQEIAALEMKIHETIESINQLKT
QRDFMLSFSNSPQDFIQDWLKSQSRDLKLMTDTAGNPEEERRSEFYQAPWVQEAVGRYVF
SKVHQRRQELEQVLGIRLT
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagaccggggttcctcccgaacagcccggcgggtccaggcaccgcgaacccc
ggccccccggggcccccaggcagtgtgcgtatggcggggatgccgcagagcacggggggc
tatcggggtctcccggtccccactggacaatacccgcgtcccagcatgccgcccagtcga
aacatgcccatgggtgggatggggccaatgggatcccccatgcctgggccatcctatggt
ggcagcatgcgccccggcatgcctcaggcagcgctggacccggtccgcaagagactgctc
catcagcaggcaggggggctggtggggcctcggagagggattaaaagacgcaagatggct
gacaaagtccttccacagaggattcgagatctggttccagagtctcaggcttatatggat
ctcttggcttttgagagaaagctggatcagaccattgctcgcaagcgcatggagatccaa
gaggccattaagaagcccatcacgcaaaagcgcaagctgaggatctacatatccaacacc
tgcacacctgccaagccagagggagaagaggctgagaaagtggcatcgtgggaacttaga
gtggagggcaaactcctggatgatcctgggaagcagaagagaaagttctcatcctttttc
aagagcttggtcattgaactcgataaggaactgtatggtccagacaatcacctggtagag
tggcacaggatgcctaccactcaggagacggatggttttcaggtgaaaagacctggagac
gtcagtgtgaagtgcaccctccttctaatgctggaccaccagcctccacagtataagctg
gatccacgactggctcggcttctgggcgtccacacccagactagatccagcataatgcag
gctctctggctttatatcaaaaacaacaagctacaggacagccacgaaaaagagtacatc
aactgcaaccgctactttagacagatttttgcatgccacagaatgaggttctctgagatc
cccatgaagctggctggactcctgcagcaccccgaccccatcgtcatcaatcatgtcatc
agcagtgtggatcctaacgaccagaaaaagacagcttgctttgatattgatgtggaagtg
gatgatccactgaagagccagatgaccagcttcctctcatctactactaaccaacaagaa
attgctgccctggaaatgaagatccatgagaccatcgagtccataaatcagctgaagacc
caaagggacttcatgttgagcttcagcaacagtccgcaggacttcatccaggactggctc
aagtctcaaagccgagacctcaagctgatgacagacactgccgggaaccctgaggaggag
aggaggagcgagttctaccaggctccatgggtccaggaggctgtgggccgttacgtattc
tccaaggtccatcagaggaggcaggagctggagcaggtactgggcattcgtcttacctaa
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