Astyanax mexicanus (Mexican tetra): 103027813
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Entry
103027813 CDS
T05042
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04120
Ubiquitin mediated proteolysis
amex04137
Mitophagy - animal
amex04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103027813 (prkn)
04120 Ubiquitin mediated proteolysis
103027813 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
103027813 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103027813 (prkn)
04121 Ubiquitin system [BR:
amex04121
]
103027813 (prkn)
03029 Mitochondrial biogenesis [BR:
amex03029
]
103027813 (prkn)
Enzymes [BR:
amex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
103027813 (prkn)
Membrane trafficking [BR:
amex04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
103027813 (prkn)
Aggrephagy
Other aggrephagy associated proteins
103027813 (prkn)
Xenophagy
Other xenophagy associated proteins
103027813 (prkn)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
103027813 (prkn)
Mitochondrial biogenesis [BR:
amex03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
103027813 (prkn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rcat_RNF216
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
103027813
NCBI-ProteinID:
XP_007247456
LinkDB
All DBs
Position
7
Genome browser
AA seq
457 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVETGASVAELKEAVGRLQGVQPDQLRVIFAGRELSSDSTLQGCD
LPEQSTVHVVLPPAGSARHSELVLQQRLGRGVNSLTRLDLSASRLHATSTGLAVILETDN
SSTVDPDTQTEPKAHSSFYVFCKSVCKAVQPGKLRVRCRTCKQGTLTLSRGPSCWDDVLL
PDRIHGVCQSQDCDGRVAEFYLKCAAHPTCDNDTSVALDLIMGNVRHVPCIACTDVMSPV
LVAQCAERHVICLDCFHLYCVTRLNDRQFIFDPMVGYSLPCAAGCPDSLIKEVHHFRVLG
EEQYERYQRYAAEECLLQMGGVLCPAPGCGAGLLPEEDRRRIQCELGEGLGCGFVFCRDC
KEEYHEGDCRRRTTPAAGGALQGYVVDEEAALRARWEQASQDTIEETTRPCPKCRVPVEK
NGGCMHMVCPRAQCKFEWCWLCCVEWNRECMGNHWFG
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtgcgcttcaactccagtcatggtttcccggtggaggtggagacgggg
gcgagtgtagcggagctgaaggaagcagtggggcgtctgcagggtgtccagcctgatcag
ctgagggtcatcttcgctggtcgtgaactctccagtgactcaacactacagggctgtgat
cttcccgagcagagcactgttcacgtggttcttcctccggccggttcagcgcggcactct
gagctggtgctgcagcagaggctgggcagaggggtgaacagtttgacacggctggacctc
agtgcctcacggctgcacgccacctccactggcctggctgtcattctagagacagacaac
tccagcacagtggacccagacacacaaacagagcccaaagcccacagcagtttctacgtc
ttctgtaagagcgtgtgcaaggcggtccagcctgggaagctgcgcgtccgatgcagaacc
tgcaagcaaggaacccttacactcagtcgggggccgtcatgttgggacgacgtccttctc
ccagacaggattcatggcgtgtgccagtctcaggactgcgatggccgagtggcggagttt
tatttgaagtgtgcagctcatcccacctgtgataacgacacatccgtagcgctggacctg
attatgggtaacgtacgtcacgtcccctgcatcgcctgcactgacgtcatgagtccagtg
ttggtggctcagtgtgctgaacgtcatgtgatctgtctggactgcttccacctgtactgt
gtgaccagactgaacgaccggcagttcatctttgacccaatggtgggctactctctcccc
tgtgccgcaggatgtcctgattctctcatcaaagaggtgcatcacttccgggtcctgggt
gaagagcagtatgagcggtatcagcgttacgctgcagaggagtgtttgctgcagatgggg
ggagttctgtgtcctgctccaggctgtggggctggtctgcttccagaggaggaccgcagg
aggattcagtgtgagctgggtgaaggcctgggctgtgggtttgtgttctgtagggactgt
aaggaggagtatcatgagggcgactgcaggcggaggaccactccagcagcaggaggtgct
ttacagggctatgtggtggatgaagaagctgctctgagagctcgctgggagcaggcctct
caggacactatagaggagaccaccagaccctgccccaagtgcagagtgcctgtggagaag
aacggtggctgtatgcacatggtgtgtcctcgtgcacagtgcaagttcgagtggtgctgg
ctgtgttgcgtggagtggaatagggagtgtatgggcaaccactggtttggatga
DBGET
integrated database retrieval system
