Astyanax mexicanus (Mexican tetra): 103027846
Help
Entry
103027846 CDS
T05042
Symbol
slit2
Name
(RefSeq) slit homolog 2 protein isoform X1
KO
K06839
slit 2
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
103027846 (slit2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amex00536
]
103027846 (slit2)
Glycosaminoglycan binding proteins [BR:
amex00536
]
Heparan sulfate / Heparin
Axon guidance molecules
103027846 (slit2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
LRRNT
Laminin_G_1
LRR_9
LRRCT
EGF_TEN
hEGF
LRR_14
LRR_1
EGF_Teneurin
EGF_DL_JAG
EGF_3
LRR_EndoS
Laminin_G_3
EGF_TGFA-like
Motif
Other DBs
NCBI-GeneID:
103027846
NCBI-ProteinID:
XP_049328210
LinkDB
All DBs
Position
25:complement(22262119..22325566)
Genome browser
AA seq
1550 aa
AA seq
DB search
MARAWVALLLALLVHGARAQLCPPQCTCAGTAVDCHAQGLRNVPRGITRSAERIDLNSNN
LTKISKADFAGFRHLRVLQLMENKISIIERGAFQDLKELERLRLNRNNLQVLPELLFLAT
VKLSRLDLSENQIQGIPRKAFRGPTELKNLQLDYNQISCIEDGAFRALRDLEVLTLNNNN
ISRMSVASFNHMPKLRTFRLHSNNLICDCHVAWLSDWLRQRPRLGLYTQCMAPPSMRGHN
VAEVQKREFVCTGSQVQTSCSVLQCPEFCTCSNNIVDCRGKGLTEIPTNLPETITEIRLE
QNSIKVIPPGAFSPYKRLRRIDLSNNQISELAADSFQGLRSLNSLVLYGNKITELPKGLF
EGLFSLQLLLLNANKLNCLRVDAFQDLQNLNLLSLYDNKLQTIAKGTFSSLRSIQTLHLA
QNPFMCDCHLKWLADYLQENPIETSGARCTSPRRLANKRIGQIKSKKFRCSAKEQYFIPG
IHHVSKCVEDYRSKLGGSCFADLACPEKCRCEGTTVDCSGQKLTKIPDHIPQYTAELRLN
NNEFSVLEATGIFKKLPQLRKINLSSNRISDIEEGTFEGAAGVNELILTSNRLENVHHSM
LKGLTGLRTLMLRSNKISCVSNSSFTGLSSVRLLSLYDNLITSIAPGAFDTLHSLSTLNL
LANPFNCNCHLAWLGEWLRRKRIVTGNPRCQNPYFLKEIPIQDVAAQDFACEDGNDENSC
SPLARCPAECSCLDTVVRCSNKALKVLPKGIPKDVTELYLDGNQFTQVPVELSNYKHLTL
IDLSNNLISTLSNNSYSNMSDLLTLILSYNRLRCIPAKAFEGLRSLRLLSLHGNDIAVIP
EGAFKDLSSLSHLALGANPLHCDCGMQWLSDWVKSGYKEPGIARCTGPADMADKLLLTTP
SKKFTCTEVPGPCGFPVPGPVDISIQAKCDPCLSNPCKNNGTCSNHPIDFYRCTCPYGYK
GQDCEEPIHACISNPCQNGGTCHLKDGAENTHWCVCPEGFEGEECEINIDDCEDNDCENN
STCVDGINNYTCLCSPEYTAANNNEVEKGELCEDKLDFCASELNQCQHDSKCILTARGYK
CECTPGYTGERCELDFDDCLDNKCKNGAQCIDAVNGYTCVCPQGYSGLFCEFSPPMVLPR
TSPCDNFDCANEAECVIKDTDPVCQCLHGYAGVKCERLLSVSFISGDAFIQIPSEITPEH
PNITLQMATEEDNGVLLYRADGGQQMAVELYRGRLRVSYDTGSFSPSAIYSAETVNDGSF
HMVELVVSDQSLSLSIDGGSPKTIPTVNKSGPGPSPPAPLYIGGVPLQSGVSSLQQGSGR
NGSSFHGCIRNLYINEELQDLSGMMLQGGVVPGCQPCQRSVCVHGQCHATGQSAFSCECE
PGWTGPLCDQQVNDPCLGNKCVRGTCVPINSYSYSCRCVPGAAGVLCDEEESFSPCLDLT
CKHGHCHVSGLGKAYCQCTSGYTGQHCDREVACRGERVRDHYQRQQGYAACQTTEKVSRL
ECKGTCGGGASCCSALRTKRRKYTFQCTDGSSFVQEVEKVVKCGCTKCPS
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcctgggtcgcgctgctactcgcgctgctggtccacggggcacgcgcgcag
ctctgtccgccacagtgcacatgcgcggggaccgcggtggactgccacgcgcagggactg
aggaacgtaccgaggggcatcacgaggagcgccgagagaatagatctcaattcaaataat
ttgacaaaaatctccaaggctgattttgctggtttccggcacctcagagttctgcagcta
atggagaacaaaatcagcattatcgagaggggagcgttccaggacctgaaagagctggaa
agactacggctgaacaggaataatctgcaggttctaccagagctgctcttcctcgccaca
gtgaaactctccagactagatctgagtgagaaccagattcagggcatcccgagaaaagct
ttcagaggacctacagaactcaaaaacctgcagttggattacaatcagatttcctgtata
gaagatggagcgttccgagctctacgggacctggaagtgctgacgctgaataataataat
atttctcgtatgtctgtggccagttttaaccacatgcccaaactcaggacatttcgtctt
cactccaataacctgatttgtgattgtcatgtggcctggctctctgattggctgagacag
aggccccgcctgggtctgtatactcagtgtatggctccgccttctatgaggggacacaac
gtagccgaggttcagaagagggagttcgtctgtacagggtctcaggttcagacgtcctgc
agtgtcctgcagtgtccggaattctgtacgtgcagtaataatatcgtagactgtcgggga
aaaggactgacggagattcccaccaacctgccggagaccatcactgagatacgcctggag
cagaactccatcaaagtaatcccacctggagcgttctcaccgtacaaacggctgcggagg
atagacctcagtaataatcagatttctgaactggctgcggattcattccagggtctgcgt
tccctcaactcactggttctgtatgggaataagatcacagagcttcctaaaggactgttc
gaggggctgttctcactacaactgctgttactgaatgcgaataaattaaactgtcttcgg
gtcgacgccttccaggacctgcagaacctgaacctgctctcgctctacgacaataagctg
cagaccatcgctaaaggaaccttctcctccctgcgctccatccagaccctacaccttgcg
cagaacccgttcatgtgtgactgtcacctgaagtggctggctgattacctgcaggagaac
ccgattgagaccagcggggcgcgctgcaccagcccccgtcgccttgccaacaaacgcatc
ggacagatcaaaagcaaaaaattccgctgttcagctaaagaacaatatttcataccaggg
atccatcatgtcagtaagtgtgtggaggattaccgttcgaagctgggaggaagctgtttt
gcagacctggcgtgtccagagaagtgtcgctgtgagggaaccacagtggactgttccgga
cagaaactgaccaagataccagaccacatcccacagtacaccgcagaactgcggttaaat
aataatgagttcagtgttctggaggcaaccggcatcttcaagaaactccctcagcttcgc
aaaattaatctgagcagtaatcggatcagtgatatcgaggagggaacttttgaaggagcc
gcaggcgttaatgaactcatcctgaccagcaaccgcctggagaacgtccaccacagcatg
ctgaagggtctaacaggcctgaggacactgatgctgcgcagtaataagatcagctgtgtg
agtaacagcagcttcactggtctgagttcagtacggctgctctctctctacgataacctg
atcacctccatcgccccgggagccttcgacacactccactcgctctcaacactgaacctg
ctggcgaacccgtttaactgtaattgtcacctggcgtggttgggggagtggctaaggagg
aagaggattgttacggggaacccgcgctgtcagaacccgtacttcctgaaggagatcccc
atacaggatgtcgctgcacaggacttcgcctgtgaggatggtaatgatgagaacagctgc
tccccattggctcggtgcccggctgagtgttcctgtttggacactgtggttcgctgcagc
aataaagctctgaaggttctacccaaaggaattcccaaagacgttaccgagctgtatctg
gatggaaaccagttcacacaggttccagtggagctctccaactataaacacctcaccctc
attgatttgagtaataacctgatcagcacgttgtccaacaacagctacagtaacatgtct
gatctgcttacactaatcttaagctacaacaggttgaggtgtatcccagcgaaggccttt
gaggggctcaggtctctgcggctgctctctttgcatggaaacgacatcgctgtgattcct
gaaggagcttttaaagacctctcctctctctcccacctggctctgggggcgaacccgctg
cactgtgactgtgggatgcagtggctctctgattgggtgaagagcggctataaggagccg
ggcatcgcccgctgcaccggacctgcagacatggcagataaactgctgctgaccacgccc
tccaaaaagttcacctgtacagaggtgccggggccttgtggttttcctgtgccaggtcca
gtagatatcagtattcaggcgaagtgtgacccgtgcttatcaaacccctgcaaaaacaac
ggcacctgctccaaccaccccatagacttctacaggtgcacctgcccttacggatacaag
ggtcaagactgtgaggaacccatccacgcctgcatcagtaacccctgtcagaatggtgga
acctgtcacctgaaggacggagcagagaacacacactggtgtgtgtgtcctgaaggtttt
gaaggagaggagtgtgagattaatattgacgactgtgaggataacgactgtgagaacaac
tccacctgcgtggacggaatcaacaactacacctgtctctgctcacctgagtatacagct
gctaataataatgaagtggagaaaggggagctgtgtgaggataagctggatttctgtgct
tcagagctgaatcagtgtcagcacgactccaaatgcatcctgaccgcccgcggatacaag
tgtgagtgtactccaggttacacaggagaacgttgtgagttggactttgacgactgtttg
gacaataagtgtaaaaacggagcgcagtgtatcgacgcggtgaacggctacacgtgtgtg
tgtccgcagggttacagcgggctgttctgtgagttttctccgcccatggttttaccccgg
accagcccatgtgacaacttcgactgcgctaacgaggcggagtgtgtcatcaaggacacg
gaccccgtgtgccagtgtctgcacggttacgcaggagtgaagtgtgagcggctcctcagc
gtgagcttcatcagcggagacgctttcatccagatcccctcggagatcacccccgagcac
cccaacatcaccctgcagatggctacagaagaggataatggggtgctgctgtaccgagcg
gacggtgggcagcagatggcggtggagctttaccggggcagactgagggtcagctacgac
accggctccttctctccatcagccatatacagtgcggagacggtgaacgacggcagtttc
cacatggtcgagctggtagtgagcgatcagtctctctctctctctatcgatggggggagt
cctaaaaccatccccactgtaaacaaatccggcccaggacccagcccaccagcaccactc
tacatcgggggtgttcctctccagtcgggtgtgtcctccctccagcagggttctggtagg
aacggttctagcttccacggttgtatccggaacctgtacatcaacgaggagctgcaggac
ctgtctgggatgatgctgcaggggggcgtggtgcccgggtgccagccgtgccagcgcagt
gtgtgtgtgcacgggcaatgccacgctaccggccaatcagctttcagctgcgagtgtgag
ccgggctggaccggcccgctctgcgaccagcaggtcaacgacccctgcctcggcaacaag
tgtgtgaggggtacctgtgtgccgataaactcgtactcgtatagctgccgctgtgtgccg
ggggcggcgggggtgctgtgtgacgaggaggagagcttcagcccctgcctggatctgacc
tgcaaacacgggcactgccacgtctccggcctcggcaaggcctactgtcagtgtaccagc
ggctacaccggccagcactgcgacagagaggtggcgtgtcggggagaacgggtccgagat
cactatcagaggcagcagggttacgcggcctgccagaccacggagaaagtctcccgccta
gagtgtaagggcacctgtgggggcggggcttcctgctgctccgccctccgcaccaagcgc
aggaaatacacctttcagtgcacggacggctcctccttcgtccaggaggtggagaaggtg
gtcaagtgcggctgtacaaaatgcccgtcctaa
DBGET
integrated database retrieval system
