Astyanax mexicanus (Mexican tetra): 103028131
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Entry
103028131 CDS
T05042
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03030
DNA replication
amex03420
Nucleotide excision repair
amex03430
Mismatch repair
amex03440
Homologous recombination
amex03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103028131 (rpa1)
03420 Nucleotide excision repair
103028131 (rpa1)
03430 Mismatch repair
103028131 (rpa1)
03440 Homologous recombination
103028131 (rpa1)
03460 Fanconi anemia pathway
103028131 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103028131 (rpa1)
03032 DNA replication proteins [BR:
amex03032
]
103028131 (rpa1)
03400 DNA repair and recombination proteins [BR:
amex03400
]
103028131 (rpa1)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
103028131 (rpa1)
DNA replication proteins [BR:
amex03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
103028131 (rpa1)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
103028131 (rpa1)
MMR (mismatch excision repair)
103028131 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
103028131 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Telethonin
IBR
Motif
Other DBs
NCBI-GeneID:
103028131
NCBI-ProteinID:
XP_022526257
Ensembl:
ENSAMXG00000008418
LinkDB
All DBs
Position
18:14365148..14406229
Genome browser
AA seq
598 aa
AA seq
DB search
MTVTLSEGAIELLIKGSEVSNPVLQCVNIRKIDGGSGPVRFRLMMSDGLHTMSSFMLSTQ
LNYLAEQSLVAPNCVCTVKRSVTNVLKDGRPVVIILDMEVIKPADQVGGKIGDPTPYVEG
QSKPPQPAPARPLQPQNGSDGHTNRGPSRDFGRKPMNAPNTPSGTSKIVPIASLNPYQSK
WTIRARVTNKSAIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFYSIIEQGKVYY
ISKGSLKIANKQYTSLKNDYEMTLNGESTIIPCEDSQDVPMVQCDFVAIADLEAREKDAI
VDVIGVCKSVEDVTRITTKNSREVSKRNIQLMDMSGRVIQVTMWGNEAETFDGSGQPILA
IKGARLSDFGGRSLSTLYSSTLMINPDIPEAYKLRGWYDKEGHALDGQSMTEMRGGGGGG
PTNWKTLADVKNEHLGHGDKADYFTCIGTIVYMRKENCLYQACPSKDCNKKVVDQQNGMF
RCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDSAETLLGQKADYIGQLKESNEAAF
DEVFQHANFNTFVFRNRVKLETYNDESRIKVTVMEAKPVDHKEYSKRLIMNIRKAAAQ
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgactgttacactgtcagaaggagctatagagctcctgatcaaaggtagtgaggtttca
aacccagtgcttcaatgtgttaatatccgaaagattgatggaggcagtggaccagtccgc
tttcgcctcatgatgagtgatggccttcatactatgtcctccttcatgctctccacacag
ctgaactacctggctgagcaaagtctggtagctccaaactgtgtctgtacagtgaagaga
agtgtcaccaacgtccttaaggatgggcggcctgtggtaattatactggacatggaggtg
atcaagcctgctgatcaggttggggggaaaataggagatccaactccttatgtagaaggt
cagtcgaagcctccacagcctgcaccagcacgtccactgcagccccagaacgggagtgat
ggccatacgaacagaggccccagtcgtgactttgggaggaagcccatgaatgcacccaac
acaccttcaggcacttcgaaaattgtgcctattgccagcctcaacccttatcagtcaaaa
tggactattcgagctcgtgtgaccaataagagcgccattcgcacttggagcaactctaga
ggagatggaaagctcttctccatggagattgtagatgagagtggagagatcagagtgact
ggatttaatcaggaggtggataaattttactccatcattgaacaaggaaaagtttattac
atctccaagggcagtctgaagatcgccaacaaacagtatacatctttaaagaatgactac
gagatgaccttgaatggcgagtccaccatcatcccttgcgaggacagccaggacgttccc
atggtgcagtgcgactttgttgccatcgctgacctggaggcccgggagaaggacgccatc
gtggatgtaattggagtgtgtaagagtgtggaagatgtgacgcgcatcacaactaagaac
agtcgtgaggtttccaagaggaacattcagctgatggacatgtctggcagagttatccag
gtcaccatgtggggaaatgaggcagagacattcgatggcagtgggcagcctatcttggcc
ataaagggtgccaggctctctgatttcggaggacgctctctctccacactctacagcagc
accctgatgattaaccctgatattcccgaggcatacaagctgagaggctggtatgataaa
gaaggccatgcccttgatggccagtccatgaccgagatgaggggaggtggaggcggtggg
cctaccaactggaagaccctggctgatgttaaaaatgagcacctgggccatggagacaag
gctgattacttcacttgcatcggcactattgtgtacatgaggaaggagaactgcctgtac
caggcctgtcctagcaaagactgcaacaagaaggtggtggaccagcagaacggcatgttc
cgctgcgagaaatgcgacaaagagttccctgacttcaaataccgtctcatgctgtctgcg
aatattgcagatttcggtgacaaccagtgggtgacgtgcttccaagatagtgctgagacc
ctcctgggccagaaagcagattatattggccaactcaaggaatcgaatgaggctgccttt
gatgaggtcttccagcacgccaacttcaacacttttgtcttccgcaatcgagtgaagctg
gagacctacaatgatgaatctcgcattaaagtgacggtgatggaggccaaacctgtggac
cataaggagtacagcaagaggctgatcatgaacatcagaaaagctgcggcacagtaa
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