Astyanax mexicanus (Mexican tetra): 103028164
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Entry
103028164 CDS
T05042
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex02010
ABC transporters
amex04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
103028164 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103028164 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
amex02000
]
103028164 (abca1a)
Transporters [BR:
amex02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
103028164 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
DUF7447
AAA_23
MRS2-like
Motif
Other DBs
NCBI-GeneID:
103028164
NCBI-ProteinID:
XP_022522959
Ensembl:
ENSAMXG00000007051
LinkDB
All DBs
Position
25:22411767..22473433
Genome browser
AA seq
2270 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTVQLLVEIVWPLFIFFILISVRLYYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGETPGVVGNFNDSIISRLFVDAKKILLYSQNDK
SFEGYKGLVRALRKLQRNTAGFKLKDFLHDNETLSQFLERNATLSKHAVQQIVDADVNLE
KVLIKGFGVHLRDLCNTTSLEDFVTIADRNVSQLTQGIICQASADWLNRAENHFLSNLDF
LKPIRKDVKSDPKVVQDVSMATDRLLESLGALTVELVSMKSWRDMRNEILYLTGNVTRSP
NHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNDNETEPMSAYDNTSTPYCN
NMMKSLESSPVSRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQQLGVLRDLGGMW
EEMRPKVWDFMENSEEMDLVRTLLQNNASARFFNTKLKGTEWRVEDISRFLTKVSEDTRP
PGSAYTWREVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMRLLDDRKFWAGIV
FPDIKANASEIPSNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSYLQ
DVIEHGIIRALTGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIK
GVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPGV
VYLFLVSFAIVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAKV
VVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSISLMLFDALLYAV
MTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKCGWTSAQTTNKRENAEAFCIEDVPSDLE
PGVYIENLVKVYRHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGT
AYIMGKDIRSDLSAIRQNLGMCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMDQIV
SDLGLPHKRKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK
YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFDL
SLSSCHNSSSTVSYSKNSLKKEDSVSESSSDAGLGSDHESETTTIDVSLISNVIFKHVPS
ARLAEDLGHELTYVLPYEAAKDGAFVELFHEIDDRLIDLGISSYGIADTTLEEIFLKVAE
DNGVDAETSDGTILSRRNRRHAFGGDHQSCLRPFTEDDSFDFNDSEGDPESRETDWLGGS
DGKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCVALIFSLIVPPF
GKYPSLELEPSMYEEQFTFVSNDAPEDLQTNKLLGALTERPAYSKRCAEEAKSVDGSCPI
RAEEWEMPEIAETVRDMFVTGNWSMDHPSPSCECSCEHSKKMLPECPPGAGGLPPPQIKV
SQTDTLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSSQPMPPADEV
HDAISHLRRRFSLERGTSADRFLKSLSGFIQGLDTKNNVKIWFNNKGWHSIGAFLNVMNN
GILRTSLPTGLDPAKFAIKAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPAS
FVVFLIQERVNKAKHLQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFVCFQQEAYVS
STNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELF
GSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGK
NLFAMAVEGVVFFFITVLIQYRFCIKARGFSANLKPIGEEDEDVARERQRILGGGGHSDI
LELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVITGGEAY
LAGKSVLTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVADWGIRK
LGLVKYVDKAAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNCILSII
KEGRSVVLTSHSMEECEALCTRMAIMVNGTFRCMGSVQHLKNRFGDGYTIVLRVAGADPQ
LEPVMKFIEHELPGSTLKEKHRNMLQYQLPSSLSSLARIFSILAKNKDELHIEDYSVSQT
TLDQVFVNFAKDQSDEDHLKDFSISKSDAVVDFSQLSSFLMDATAKETVV
NT seq
6813 nt
NT seq
+upstream
nt +downstream
nt
atggccgtctccactcagttgggtttgctgttgtggaagaacttcacctacaggcggagg
caaaccgtccagctgctggttgagatcgtgtggcctctctttatcttcttcattttgata
tcagtgcgactctactatcctccctacgagcagcatgaatgccactttcccaacaaggcc
atgccctcagcgggcaccctgccatgggtgcagggcatcatctgcaacgccaacaacccc
tgcttccgctaccccacccctggagagactcctggggtcgtgggcaacttcaacgactcc
atcatctcccggctgtttgttgatgccaagaaaatccttctgtacagccaaaacgacaag
agctttgaagggtacaaaggactcgtcagggccctcaggaaattacagaggaacacggca
ggttttaagctgaaggactttctccacgacaatgaaacgctgtctcagttcctggagcgg
aacgctaccctgagcaaacacgccgtgcagcagatagtggacgctgacgtcaacctggag
aaggtgctgattaaaggtttcggagttcatctgagagatctgtgtaacaccacgtcactg
gaggactttgtgaccatcgctgaccgcaacgtttcccagctgacccagggcatcatctgc
caggcctccgcagactggctgaaccgggcagagaaccacttcctctctaacctcgacttc
ctcaaacccatcagaaaggacgtcaagtctgacccaaaggtggtccaggacgtgtccatg
gcaacagacaggctgctggagagccttggagctctgactgtggagctggtgagtatgaag
agctggcgggacatgcggaacgagatcctgtacctgacgggtaacgtcacgcgctccccg
aaccacatgtaccaggccgtgtcccgcatcgtctgtggtcacccggagggcggcggcctc
aagatcaaatccctcaactggtacgaagacaacaactacaaggccctgttcggtaaccat
aacgacaacgagaccgagcccatgtccgcctacgacaacacgtccactccctactgtaac
aacatgatgaagagtctggagtccagccctgtctcccgtatgatctggagagctctgaag
cctctgctgatggggaagatcctgtacacacccgacactccggccacacagaggatcatc
catgaggtcaataagacgtttcagcagctgggtgtgctgagggacctcggggggatgtgg
gaggagatgaggccgaaagtctgggacttcatggagaacagtgaggaaatggatctcgtc
agaactctgctgcagaataacgccagcgctcgcttcttcaacactaagctgaaaggaacg
gagtggagggtggaggacatttccagattcctgactaaagtctcagaagatactcgcccc
cctggatcagcttatacctggagagaggtgttcaacgagacggaccaggccatccaaacc
atctctagattcatggagtgtgtaaacctggataaactggagccggtggccaatgaggag
cgtctggtgaataagtccatgcgtctgctggatgatcgcaagttctgggccggaatcgtg
tttccggacatcaaggccaacgcatctgagataccgagtaacgttaactacaagatccgc
atggacatcgacaatgtggagcgcaccaacaagatcaaggatgggtactgggaccccggt
cctcgtgctgacccattcgaggacctgcgctacgtctggggtggtttctcttacctgcag
gatgttattgaacatggaatcatcagagctctaacaggcagcaaggagaaaactggagtc
tacatccagcagatgccctacccgtgctacgttgacgacattttcctgcgagtgatgagc
cgctccatgcccctgttcatgactctagcctggatgtactcagtggccatcatcataaag
ggcgtggtctacgagaaggaggcccgtctgaaggaaaccatgaggattatgggtctggat
aatggaatcctctggctaagctggttcattagcagcctgatccctctgctcatcagcgcc
gccctgctggtgctcattctgaagatggggaacctgctgccctacagtgacccgggtgtg
gtctacctctttctggtgtcctttgccatagtgaccatcatgcagtgcttcctcatcagt
acgatcttctcccgcgccaacctggccgctgcctgcggaggcatcatctacttcaccctc
tacctgccctatgtgctgtgtgtggcctggcaggactacgtgggctttggggccaaagtg
gtggtgagtctcttgtcgccggtggcgttcggcttcggctgtgagtactttgcgctgttt
gaggagcagggggtgggcattcagtggagtaacctgctctccagcccgctggaggaggac
agctacagcctcactacctccatctccctcatgctgttcgacgctctgctctacgctgtc
atgacctggtacatcgaggccgtcttcccgggtcagtacggtattccccgcccctggtac
ttccccttcactaagtcctactggtgtggagagaaatgtggctggacttcagcacagacc
accaacaagagggaaaacgcagaagcgttctgtatcgaggacgtaccctctgatctggag
cctggcgtctacatcgagaacctggtgaaggtgtacagacacggcaacaagctggcggtg
gacggactgactctgggcttctacgagggccagatcacttccttcctgggccacaacgga
gcgggaaagaccaccaccatgtccattcttactggcctcttcccgcccacatccggcacc
gcctacatcatgggcaaagacatccgctcagatctcagcgccatccgccagaacctgggc
atgtgcccacagcacaacgtcctcttcagcatgctgacggtggaggagcacatctggttc
tacgctcgtctgaagggcctgtctgaggagaaggtgaaggctgagatggatcagatagta
tcagacctcggcctgcctcacaaacgcaaatccaaaaccagccagctctcaggtggaatg
cagaggaagttatcggtagctctggcattcgtcggaggttcaaaggttgtgattctggac
gagcccactgctggggtggatccgtacgcacgcaggggcatctgggacctgctgttaaaa
tatcgtcaaggccgaaccatcatcctctccacccaccacatggacgaggctgatatcctg
ggtgaccgtatagccatcatctcccatggaaagctgtgctgcgtaggctcctccctcttc
ctcaagacacagctaggaactggatactacctgaccctggtcaagagggacttcgacctc
tcgctcagctcctgccacaactccagcagcaccgtgtcctactccaagaacagcctgaag
aaggaggacagcgtgtctgagagcagctctgatgctggactgggctcggaccatgagagt
gaaactaccaccattgatgtctccctcatctccaatgtgatcttcaagcacgtcccatct
gccaggctggcggaggacttgggtcacgagctcacttatgtgttgccgtatgaagcagcc
aaggacggagccttcgttgaactgttccacgagattgacgatcgcctcattgacctcggc
atctccagctacggcatcgcagacacaacactggaggagattttcctcaaagtcgctgag
gacaatggcgttgatgctgaaacttcagatggcaccattctttcaagaaggaaccgtaga
cacgcatttggtggagaccatcagagctgcctgagaccgtttactgaagacgacagcttt
gatttcaatgactcagaaggtgatccagaatctcgtgagacggactggctgggcggttct
gatggtaaagggtcgtaccaggttaaagggtggagtctgaagaggcagcagtttgtggct
ttgctctggaagcgcttcttgtatgcccgacggtctaggaaaggattctttgctcaaatt
gttctgcctgctgtatttgtgtgcgtcgccctgatcttcagcctgatcgtcccaccgttt
ggaaaatacccaagtctggaactggaacccagcatgtatgaagagcaattcacttttgtc
agcaatgatgccccagaagacctgcagaccaacaagctactgggagctttaacagagcgc
ccggcctacagtaaacgatgtgcggaggaggcgaagtctgtagacggctcgtgtccgatt
cgagctgaggaatgggagatgcctgagatcgctgagacagtgagagacatgtttgtgact
ggaaactggagcatggaccacccgtctccctcctgcgagtgcagctgtgagcacagtaag
aagatgctcccggagtgtccaccaggagccgggggtctgccaccaccacagattaaagtc
agccagacggacactttgcagaatctgactgggaggaatatctcagactacctggtgaaa
acatacgcgcagattattggcaaaagtttgaagaacaagatctgggtgaatgaattcagg
tatggaggattctcattgggtgccagaagttcacagcccatgccccctgctgatgaagtc
catgacgctatctctcaccttcgaaggcgtttcagcttagaaagaggaacttcagccgat
cgtttcctgaagagcctgtctggattcatccagggcctggataccaagaacaacgtcaag
atctggttcaacaacaaaggctggcacagcatcggagctttcctcaacgtgatgaacaac
gggatcctgcgcaccagcctgcccactggactggaccctgccaagttcgccattaaagcc
tttaaccatcccctgaacctcaccaaggagcagctctcccaggtcgccctgatgaccacg
tctgtggacgttctggtgtccatctgcgtgatttttgccatgtccttcgtcccggccagc
tttgtggtcttcctcattcaggagagagtgaacaaagccaagcacctgcagttcatcagc
ggagtgcagcccttcctctactggctcgccaacttcgtgtgggatatgtgtaactacatc
gtcccggcgaccctcgtcatcatcatcttcgtctgctttcagcaggaggcctacgtctcc
tccaccaacctgcctgtcctggctctgcttctgctgctctacgggtggtccatcactcct
ctgatgtatccagcatccttcttctttaagatccccagcaccgcctacgtggttctaacc
agcgtcaacatcctgattggaatcaatggcagcgtgtccacgttcgtgctggagcttttt
ggcagcaatgagatcggtggcatcaacgatatactgaagaacgtgttcctgatcttccct
cacttctgtctgggccgggggctgatagatatggtgaagaaccaggccatggctgatgct
ctggagagatttggtgagaaccggttccgttctcctctggcgtgggacatggtgggcaag
aacctctttgcaatggctgtggaaggcgtggtgttcttcttcatcactgtgctgatccag
taccggttctgcatcaaagccaggggatttagcgctaatctgaagccgatcggtgaggaa
gatgaggacgtagccagagagaggcagaggattctgggtggaggtggacacagcgacatc
ctggagctcaggcagctcaccaaggtgtataagaggaagcagaagccggctgtggacaga
ctgtgtgtaggaatcccacctggagagtgtttcggtttgctcggggtgaacggtgctgga
aagacgagcaccttcaagatgctgactggtgattcagtcatcactggaggagaggcgtat
ttagctggaaagagtgtgctgacagaaatagacgaggtgcatcagaacatgggctactgc
ccgcagttcgacgccattaacgacctgctcacgggccgagaacacctggagttttacgcc
attctgaggggagtgcctgaaaaagaagtctgtgaggtggcggactgggggattcgtaag
ctggggctggtgaagtatgtggataaagctgctgggagctacagtggaggaaacatgcgg
aaactctccactgccatcgcactgatcgggggtccaccggtggttttcttggacgagccc
accactggtatggaccctaaagcccggcgagcgctgtggaactgcatcctcagcatcatt
aaagagggacgctctgtcgtcctgacctcacacagtatggaggagtgtgaggctctctgc
actcgtatggccatcatggtcaacggcacgttccgctgtatgggcagcgtccagcacctg
aagaacaggtttggtgacggttacaccatcgtgctgcgggtggcgggagcggaccctcag
ctggagccggtgatgaagttcatcgagcacgagctgcccggcagcactctgaaggagaag
cacaggaacatgctgcagtaccagctgccttcatccctgtcctcactcgcccggatcttc
agcatcctcgccaagaacaaagacgagctgcacatcgaggactactccgtctcacagacc
acgctagaccaagtattcgtcaattttgccaaggaccaaagtgacgaggaccacttaaaa
gacttttccataagcaagagcgacgcggtggtggacttttctcagctcagctctttcctc
atggacgccacagccaaggaaaccgtggtgtga
DBGET
integrated database retrieval system
