Astyanax mexicanus (Mexican tetra): 103028329
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Entry
103028329 CDS
T05042
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
amex01001
]
103028329 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
amex04054
]
103028329 (ciita)
Enzymes [BR:
amex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
103028329 (ciita)
Protein kinases [BR:
amex01001
]
Serine/threonine kinases: Other
TAF1 family
103028329 (ciita)
Pattern recognition receptors [BR:
amex04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
103028329 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
LRR_8
AAA_25
nSTAND_NTPase5
AAA_22
Motif
Other DBs
NCBI-GeneID:
103028329
NCBI-ProteinID:
XP_049323743
LinkDB
All DBs
Position
19:complement(4548719..4576362)
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AA seq
1185 aa
AA seq
DB search
MASFQEVLREVRKVVQEAHPDLLTAFLTELLEAEVFSAEYYQSLFQCTDPDLGVRTDVED
LARKLALPVWQTWDNSKEILYSALGSLEDPQDDFVESEPLTPDPQLLDLVPVSWFEELLF
RPDLPEFETPDAYFESLKEECDALDAEAECQVPLKEENEDGKRTKRKLSASLFEELLSRP
DLLECDSIDALIESLKDEFETLDAEAECPILVKEENENGKKPKRKRPAVERSSRKRRRLN
QKKPAPLSAESPPAGSVSHMSDVNMSTPLPQLLHVSLLPCSATPTLQLIQPINGLVRPTY
VLVSPQSGGPLYQIVPLSPAVGAVAPVELSRTTQIMSSLSDTASKIQPPSPPTPVSPSKD
KTPQDYSPPSTPLRTQEPRPEIPKRVEDYIQKLKSHLKDTYSVMEGGKKMDSHYIDTRLV
QRKLVIQTGKNANKCLEKELVVLSDSERRKAMVDRSHVFQNCGPKPKPLITVLGKTGLGK
STLIQRLALDWSTGGLAQFQFVFLLNCKVLDVTKSNYDLKTLLFGLSSAPDCKDSEAAFK
YVLANPNKVLIIFDSFDDIGELEGLLQSSATSVTDNSYTVRQLFSGLFQKKILSGCTLLV
ATRPKDALNHLLRKVDSILEICCFSPKDIQFYVSKCFVEASKQESALRKIQNQQYIFNLC
SNPLLCRFTCFLLEQDNPEDDDTLPSTLTDLCQRVLDHHLELRDKVQGSKQDISQLCNMA
WDSFKTCSSLLNQDQTEISKQLMDCGLNCEILASHKAQVTYFSSLFMQNFLAAMFLVQSK
DINERTLVAQTILNHRKKKVCGEWQDILQRFILGLLYQKATPHYCGALQSFNDAQAKRKT
LETQLENLKPGELTPGRLLELFHCVYETSKVRLAKHLVKKLPENLSFCGAQLTPVDVYVV
WHLLQHAKGLKRTFSVDLRDTCVPLSGLKELVALSCITSFRAPTLDTIDLWEDLHHNSDE
VSLKNALDKFTMDPFKASQLSHLDNLGLLVQIHREKKLPMRESELTLEDGIPAVRHLKKL
EYEFGRNEPEAFLKLIEILPALESLQHLDLENNILRDSEAEKLAGVLNSLSSLRILNLSQ
NRIGDAGMEKLAQSLAAASSLQKLSLYGNEIADSGAENLASVLPAMKSLLNLDVKYNQFT
DIGAKKLSMALKNSPSLKSLQMWNNSIPLGVLDHLRIQDNRITAP
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctttccaggaggttctgcgtgaggtgaggaaagttgtgcaggaggcccacccg
gacctcctcaccgcgttcctcaccgagctcctggaggccgaggtgttctcggcggagtac
taccagtccctgttccagtgcacagaccctgatctgggcgttcggacggatgtagaggac
ctggccagaaaactggccctgcctgtttggcaaacgtgggacaatagcaaggaaatcctc
tactctgctctcgggagtctggaagatcctcaggatgattttgttgaaagcgagcccctc
accccagatccacaactcctggatcttgtaccagtctcctggtttgaggaactgttattc
agacctgatttgccggagttcgagactccagatgcttactttgagtccctgaaggaggaa
tgtgatgcactggatgcggaagctgagtgtcaggtcccgctgaaagaggagaatgaagat
gggaaaaggaccaagaggaaactatcagcctccttgtttgaggaactgttatccagacct
gatttgctggagtgtgacagtatagatgctttgattgagtctctgaaggatgaattcgaa
acactggatgcagaagctgagtgtcccatcctggtgaaagaggaaaacgaaaatgggaaa
aagcccaagaggaaacgaccagcagttgaaagatcatcaaggaaaaggcgtcgcctcaat
cagaagaagccagctccgctgagtgctgaaagtccccctgcaggcagcgtttcccatatg
agtgatgtgaacatgtctactccactgccccagctcctgcatgtctctctgctgccctgt
agtgctactccaacactgcagctcatacagcccattaatggactagtcaggcccacctac
gttctggtctccccgcagtctggaggtccactgtatcaaatcgttcctctttcacctgct
gttggagctgtggctcctgtagaactcagccggaccacccaaatcatgagctccttatcc
gacactgccagcaagattcagcccccatcaccccccactccagtttcaccctcaaaagac
aaaacaccacaggattattctcctccctccacgcctctaagaacgcaagagccacgtcca
gaaataccaaaacgagttgaggactacattcagaagctgaagtctcacctaaaagacaca
tatagcgttatggaaggaggcaagaagatggactctcactacattgacactcggctggta
caaaggaagcttgtcattcagaccggcaagaatgcaaacaagtgtctggagaaggagtta
gtggtgctcagtgattcagagcgaaggaaagccatggtggacaggagccacgtcttccag
aactgtggacccaaacccaagccactgatcactgtcctcggaaagactgggcttgggaag
agcacgctcatccagcggttggcgttggactggtccaccggtggccttgcacagttccag
tttgtatttctgctgaactgcaaggttttggacgtcactaagtcgaattatgacttaaag
actttgctgtttggcctctcttctgcgccagactgtaaagattcagaagctgccttcaaa
tacgttctcgctaatcccaataaggtgctcattatctttgacagttttgatgatattggg
gaactcgagggcctcctccagtcctctgctacctcggtcacggacaatagctacaccgtc
aggcagctgttttctggtctgttccagaaaaagatcctgtctggttgtaccctactggtc
gccaccaggcccaaggacgctctgaaccatctgcttcgcaaagtggacagcattttggaa
atctgctgcttctcgccaaaggatatccagttctacgtctcgaaatgctttgtggaggct
tcaaagcaagagagtgccttaagaaaaatccaaaaccaacaatacatcttcaacctgtgc
tccaatcccttgctctgtcggtttacatgcttccttctggagcaggataacccagaagat
gatgatacgctgccgtctactttgacagacttatgtcagagagtgcttgaccatcatctt
gagctaagagacaaagttcaaggctcaaaacaggacatttcacagttgtgtaacatggct
tgggacagtttcaaaacctgcagctcccttttaaaccaagatcaaaccgagatctccaag
cagttgatggactgtggactcaactgtgagatactcgcatcccataaagcacaggtgact
tacttttccagcctcttcatgcagaactttctggcagccatgtttctggtccagtccaaa
gacataaacgaaagaacgctggtggcccagacgattctaaaccaccggaagaagaaagtg
tgtggggaatggcaggacatcctccaaaggttcattctggggttgctctaccagaaagcc
actcctcattactgtggtgctctgcaaagcttcaatgatgcccaggccaaaagaaagacg
ctggagacccaactggagaacctgaaaccaggcgagttgacccccggcaggttactggaa
ctctttcactgcgtctacgagaccagtaaagtccggctcgccaaacacctggtcaagaag
cttccagagaacctgtcgttctgtggggctcagctcacaccagtggatgtatatgttgta
tggcaccttcttcagcacgccaagggacttaagaggacgttctctgtcgacctaagggat
acatgtgttccattaagtggactaaaagagctggtggcactgagttgcatcacatcgttc
cgggctccaacattggataccattgacctttgggaagacttgcaccacaacagtgatgaa
gtgagcttgaaaaatgcccttgacaagtttaccatggacccattcaaagcctcacagctg
agtcacctggacaacctgggcctacttgtccaaatccacagggagaagaagctgccaatg
cgtgaatcagaattaactctggaggacggcatccctgctgtcaggcatcttaaaaagctg
gagtatgagtttggtcggaatgaacctgaagctttcctcaaactcatagagatcctacct
gctctagagtctctccagcacctagacctggagaacaacatactccgggattctgaagca
gaaaaactggcaggagtcttaaattctctatcatctctaagaattctaaatttgtctcag
aacagaataggggatgctgggatggagaaactggcccagagcctggcagcagcctcctca
ctacaaaaactgagtctctatgggaatgagatagctgacagtggagctgaaaacctggcc
tctgtattaccagccatgaagtcgctgttgaacctggatgtcaagtacaaccagttcaca
gacatcggtgctaagaagctcagcatggccttaaagaactctccgagtctgaagtctctt
caaatgtggaacaacagcatcccacttggggttttggatcatcttcggattcaagacaac
aggattacagctccataa
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integrated database retrieval system
