Astyanax mexicanus (Mexican tetra): 103028334
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Entry
103028334 CDS
T05042
Symbol
prdm16
Name
(RefSeq) histone-lysine N-methyltransferase PRDM16 isoform X6
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex00310
Lysine degradation
amex01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
103028334 (prdm16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103028334 (prdm16)
03036 Chromosome and associated proteins [BR:
amex03036
]
103028334 (prdm16)
Enzymes [BR:
amex01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
103028334 (prdm16)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
103028334 (prdm16)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
103028334 (prdm16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
PRDM2_PR
zf-C2H2_jaz
zf-C2H2_6
zf-C2H2_11
zf-met
SET
zf-H2C2_5
C2CH-3rd_BIRD-IDD
Zap1_zf1
DUF7128
zf-BED
Zf-C2H2_ZNF451_6th
zf-C2H2_15
C2CH-4th_BIRD-IDD
Motif
Other DBs
NCBI-GeneID:
103028334
NCBI-ProteinID:
XP_022526417
Ensembl:
ENSAMXG00000014024
LinkDB
All DBs
Position
12:19461081..19765832
Genome browser
AA seq
1302 aa
AA seq
DB search
MRSKARARKLAKNDSEAVENMYDTELNPAAGESAEEETEDSIMSPIAVGPASPQPNNEDF
TPKEGSPYEVPVYIPDDIPIPSNLELRESSVPGAGLGIWAKSRIGMGERFGPYNGLQSAT
VKETTYGWEQMLNDHEASSQDSCIKKVVDDMGNVKFCLDGSLEASGSWLKYVRTAPSYED
QNLAVCHLSEDQIFYKAIRDIEIGEELLVYMKDGIFPEGSMAPNLEDEQMYRCEDCDELF
TSKLELRRHQKYSCSSGNSIFDTLSEDLKQEREDSDEPVYECKDCEKIFPSEYSLSQHMV
VHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKRFECENCDKVFTDPSNLQRHIRSQHV
GARAHTCPECGKTFATSSGLKQHKHIHSSVKPFMCEVCHKSYTQFSNLCRHKRMHADCRT
QIKCKDCGQMFSTTSSLNKHRRFCEGKNHYSPAGMFTPGIPMTSSPIMGKSKPHPGLNHG
GLGFGDYFSSRPHHPGLPFSTAPPAFPSLSHGFPGIFPPSLYPRPPLLPPSPLLKSPLSN
SHDGKLPHVPLDGPALPLVTSVNNTNGNAGSGLSSQSEEIRESKLDLSFSDGKNKVKMSD
MSDGSDLEDVNTTSGTDLDTTTGTVSGSDLDSEAESEREKSRRKSGQEGKQDEVSSSSVS
VSSSGNLPHDRPFLSSQHSFFPPPDEQALPPTGAATDSIKAIASIAEKYFGPGFMGLQEK
KMGSLPYHSMFPFQFLPNFPHSLYPFTDRALNPNMFLKPEPKSPHEHIQKMATTTATESP
FDLTTKPKEVKALLPPSNKPALTSSALLPSGEEQPLDLSIGSRSRASQNGGTPDQRKNHV
YGANCKTQVKDEHPVLNQSQNLHQPQMPQQQVSLPQPPPPQQQPSLHYAKPSPFFMDPIY
SRVEKRKLIDPVGALKEKYLRPSPLLFHPQMSAMENMTEKLESFGALKLDAPNSLQHSSH
HLFNFRSPPPSLSDAILRKGKERYACRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRS
FSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHEHENIPVSQHSGILSNL
GTNISSPNSEPDNHALLDEKEDSYFSEIRNFISNSELNQACSSSEKRSELAEEERPECHA
VKGSKLEEEDEEVEGDDEDEEGSLTEKSQDETASPATMVQGTYEDDEESAPLSMTYEHPR
RCMEEEAGLLDLEPLPGFPKGLELHKPGEEPFDVKDIFNTSLESEVLKETLLRQAKTQAY
AMMLSLSENNSLHPSSQNSLDAWLNLGGGPSETSSFHPLNHI
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgaggtccaaggcgagggcgagaaaactggccaaaaatgacagcgaggcagtagaaaac
atgtacgacacagagctcaacccagcggccggcgagagcgccgaagaggagacggaagac
agcatcatgtcaccgatcgccgtggggcctgcctccccccagcccaacaacgaggacttc
accccgaaagagggctcaccctacgaggtccctgtctacattcctgatgacattcctatc
ccctccaacctggagctgcgtgagtcctctgtaccaggggccggcctaggaatctgggcc
aaatccagaatcgggatgggcgaacgtttcggaccatacaacggactgcagagtgccacg
gtcaaagaaaccacttatggatgggagcaaatgctaaatgatcacgaagcttcgtctcag
gacagctgcatcaaaaaggtcgtggacgacatgggcaatgtgaagttctgtctggacgga
tctctggaggccagcgggagttggctgaagtacgtacgcacagcgccatcctacgaagat
cagaacctggctgtgtgtcacctcagtgaagatcagattttttacaaagctattagagat
attgagattggggaggagctgctggtttatatgaaggacggaatcttccctgagggctcc
atggcacccaacctggaagatgaacagatgtaccgctgtgaagactgtgacgagctcttc
acctcaaagttggagttgaggaggcatcagaaatactcctgcagcagtgggaactccatc
tttgacacattaagtgaagatctcaaacaggagcgggaggacagcgatgaaccagtgtac
gagtgcaaagactgtgagaagatcttccccagcgagtacagtcttagccagcatatggtg
gtgcacacagaagagagggagtacaagtgtgaccagtgccctaaagccttcaactggaag
tccaacctcattcgtcatcagatgtcacatgacagcggcaagcgatttgagtgtgaaaac
tgtgacaaggtgttcacagaccctagcaacctgcagcgccacatccgctcacagcacgtc
ggcgcccgtgcccacacctgccccgagtgtggcaagaccttcgccacttcatcgggcctc
aagcaacacaagcacatccacagcagtgtcaagcctttcatgtgtgaggtgtgtcacaag
tcctatacccagttttccaacctgtgccgccacaagcggatgcatgcagactgccgcacc
cagatcaagtgcaaggactgcgggcaaatgttcagcactacctcctccctcaacaagcac
cggcgcttctgcgagggcaagaaccattacagtcctgcaggcatgttcaccccgggcatc
cctatgacctctagccccatcatgggcaaatctaaaccccaccctggactgaatcatggc
ggacttggcttcggcgactacttttcctcacggcctcaccacccaggcctgcctttctcc
acggcccctcccgcattcccctccctttcccatggcttcccaggaatcttccccccatca
ttatatcctaggccaccattgttaccccctagtccattattaaagagtcccctgagtaac
agtcatgatgggaagctccctcatgttccactcgatggtcctgccctccctttggttaca
tctgttaacaacactaatggcaacgcaggaagtggccttagtagccagtcggaggaaatt
cgagagtccaagctggacctgtccttttcggatggcaagaataaggtgaaaatgagtgac
atgtctgatggcagtgacttggaggacgttaacaccacaagtggcaccgatctagacacc
accaccggcaccgtttctggctctgacctggacagcgaggcagagagtgaacgggagaaa
agtcggaggaagtcggggcaggaaggcaagcaagatgaggtcagcagcagctctgtgtcc
gtgtccagctcaggcaaccttcctcatgaccgtcccttcctctcctcccagcattccttc
ttcccaccacctgacgagcaagcgctcccacctacaggtgcagcaactgactccatcaaa
gccattgcttccattgcagaaaagtactttgggccaggtttcatgggcctgcaggagaag
aaaatgggctcgttgccctaccattccatgttcccctttcagttcctgcccaacttccca
cattccttgtaccctttcacagacagagccctcaaccccaatatgttcctgaaaccagag
cccaaatcacctcatgagcacatacagaaaatggccaccaccactgctacagagtcaccc
tttgacctcaccaccaagcctaaggaggtgaaagccctcctgccaccctccaacaagcct
gccttgacttctagtgcactcctgcccagtggcgaggaacagcctctggatctgagcata
ggcagccggagcagagcgagccaaaacggcggaacacctgaccagcgcaagaaccacgtt
tacggcgcaaactgcaaaacgcaggttaaagacgagcatccggtgctgaaccagtcccag
aacctgcaccaaccccagatgccacagcagcaagtgtcccttccgcagccgcctcctccc
cagcagcagccctcgctacactacgccaagccctcgcccttcttcatggatcccatctac
agcagggtggagaaaaggaagctgatagatcctgtaggagccctgaaggagaagtacctg
aggccatctccactgctcttccatccacagatgtcggcgatggagaacatgactgagaaa
ctggagagctttggtgcattgaaactggacgctcccaattccctacagcactcctcacac
cacctctttaacttccgctcccctcccccttctttatcggacgctatccttcgcaaaggc
aaggagcgctacgcctgcaggtactgtgggaaaatctttcccaggtcggctaatcttacc
aggcacttacgaacacacacaggagagcaaccctacagatgtaaatactgtgaccgttcc
ttcagcatctcttctaacctccagcgacatgttcgtaacattcataacaaggagaagccc
ttcaagtgtcacctgtgtaaccgctgctttggtcagcagaccaacctggaccgccactta
aaaaagcatgagcatgaaaatattccagtgagtcagcactctgggatcctctcaaatttg
ggaacgaatatctcctctccaaactccgagcccgacaatcatgcacttttagacgagaag
gaggactcatatttctcagagattagaaacttcatctccaatagtgagctgaaccaggcc
tgcagctcctcagagaaaaggtcagagctggcggaggaagagcgtcccgagtgccatgcc
gtcaaaggctccaaattagaggaggaagatgaggaggtggaaggagatgatgaagatgag
gaaggttcgctgacagagaagtcgcaggacgagacggcttctcccgccaccatggtgcaa
ggcacttacgaagacgacgaggaatcggctcctctctccatgacctacgaacacccgcgc
aggtgtatggaggaggaagcaggactgttagatctggagcctctgccgggtttccccaag
ggcctggagctccataagcctggagaagagccctttgacgttaaagacatttttaacacc
tccttagagtctgaggtgctgaaagaaacgctgttgaggcaggctaaaacccaggcttat
gcaatgatgctctctctgtcagagaacaactctctgcatccgtcctcccagaattcgctg
gatgcctggctgaacctgggaggaggcccttcagaaaccagctcctttcatccactcaac
cacatctaa
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integrated database retrieval system
