Astyanax mexicanus (Mexican tetra): 103028376
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Entry
103028376 CDS
T05042
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103028376 (setx)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103028376 (setx)
5.6.2.5 RNA 5'-3' helicase
103028376 (setx)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103028376 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
UvrD-helicase
AAA_30
Viral_helicase1
AAA_22
AAA_16
ResIII
SLFN-g3_helicase
UvrD_C_2
NPHP3_N
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
103028376
NCBI-ProteinID:
XP_007256619
Ensembl:
ENSAMXG00000014406
UniProt:
A0A8B9L7N3
LinkDB
All DBs
Position
17:complement(27331628..27373781)
Genome browser
AA seq
2455 aa
AA seq
DB search
MATCLWCRALAESDADVAATLQSYSNGGMTPTERQGANDDLIYCSDCVEKYHELRERVPA
LHERLWEIETTRLLEVFREMFDSEMEEDDLYLVENGKEQPISGISLDEIHDRLRSPFMEV
LKYPYLLCHQGLCEMVVNVLCKMEELNSPLHAFEKYQGIYLLMVHPNETVRRWAIATAKS
KGSVDRDSFYSLQEAFFCMFMVLELGITLKDKDVNTFYSGSLPHHLPLHLYDTENEKNYW
LGICMLLMQLDSQAMESLFMGPNKQCNIPQCIMNTMKEERKGKNMASDPFWPALQCFMVI
LDRLGSKIWCEIDLPGAFGIITQAASYVAEVQNIRQKTKGTRVKEEPDSDDYDDDDNMVT
CSQMVYDHYPTDQANRASGWSSNRNEKNINEIIEDMGSLVDGLQSEMGQGIRVYGSTFLW
FIPYVRSVMELGDLGNSFIDEVMQYLYTEVNKDVLSGETQTWDKVTEFFIIILIDIIELL
LGKGCMRTLHYCAPTWVKVIVQCSMLETCINAVPNRRSGSYRVTFASSAFGKRNQILANG
VCAVSQASMRLIRSLLKEGERIVNVTVTDLARFLDLLNRHLRGNKVWDLQPSDSKNLQNC
ITMLLNAVVARTATTPNVPSAPPTSPADPPENVMYPSATFTDPLQEPRFKNAATGPCSAV
NFMKEEPLCEEYRDYFCDNLEDIKPKKEPCSPVPVSKLQPTLELNHLKPDFNKINEIKCK
LNDSSKIQAFTKSRLDPIEQNQNEHGHLKETVKITPSSSSDTTSQSTISNFAKAERPSKK
KQDYDYDDEPLNVRRRRLKQTHEISSSETEDSKSGIKTSMQVSSHAKEVSDLIVISDDEV
ATTDQILASDSSSESPVNRVAYEPSSDHDLNESPGREYDNDFSESQVFEFETQENIASAW
TDPYVDHPVNNKKPKRDCSLKISTSPATVEPTSSWVNNTQPVTDEEIEKACQEVEEQVSK
QQLQDAPTSSTIVPPKPKSSAAKWDNFTKPKSVPLRSPTKKLDLGDKRGQQCSNKKSLLI
EPLDRKVKKRRSSLSTASTECPVSSVTPSASMVSERSSFVSRDSRLFPSPAIVPPKKIRK
AVEPESVAERMGLKKKERKAFDLSQRTLDTLGELRTHGQSVHVEQPQKSKRVCRKSKPQP
QLKLAGKGGKKLLASQDMQYFRQSKGMLKKSTPANATLSKPIRNHVPKNLPKSKRTVENV
LEPGEGEAEDDYDEEEDDYQKFLPCSQPDPARKNHQNDRDRKNVSESHKIKPILFDAESK
GPSPNQVADRNEDSTASNTDTKWVGYCVDDKDYDEDLWPLTQNESIDMELCTQTEETEAN
WEFPLTQRDPVDMDIDMDSQPHASDGGPDVQTKPQPAFIVQDAPPAALIQKPVDESGLFL
KPGMSPVSQKKAKPSTTKIYAPSSRIDSLVGEMEKTTKTKVVRPPPVIPPPSKTVPQPCK
PQKAVPQSSALPKAIPQPSPKAVLQSDFKKPLPCLRRPPPVQGLKSAVQNNIASHPPSYK
TYSRPEDPVVKSAVTRNQPQWFDQSLLTQAILKWEFRMFENYRGNGLPDDLCPWPLKEVP
TTFSTHEEYFSTMYPLLLANLFEEMVSEWQRSGRVEISLKVQGLESTNHTASFTASLGSE
QEMRQYYPKEDDLVLLWLPKNKSAYASGDPDVNERHASFGCVSRSSVINNGAGQHSTLNL
TIQTRGNVSSVNTQHVRCEVIGSLITTMREFRALCHLKSGIMARPYILLKPHVSVFTPCQ
ESLPDLDMPEYNTDQAKAISCGVAMVKRRQYSAPKILLIHGPPGTGKSKTIVGLLQRLFS
EHNDNIAVNRHSKSHRMRVLLCAPSNAAIDNLMKKVILAFKEKCRDINSPQGNCGDINLV
RLGSEKTISKSLTGFSLDSQTSKKTQMRADPDVQRQKHRLDQAIENLSRQCAITQKQSPE
FKQLMDKKQHYLSEREKLSRHLREFRSKRQEVQAGVLRDAHVICCTLSTSGSLVLETAFR
RHGREPFSCVIVDEAGQAKEAESLIPLLHRCPALILVGDPDQLTPTVVSQKAKELGYDQS
LMARLWKSLHPSNPSIFLSIQYRMHPDICSFPSKYIYGNRLKNDWAGECLQYRHLQAEQR
QLYRFGLRWAGPCYCETAQKRCSVNWPFEPYRVFDVMDGRENKENDSSFSNQKEVKLILM
LLKLIGEKQVVRVGVITPYNAQKQQILRAVNAEARGNKTLQVEVDTVDGFQGREMECIIV
SCVRASSEMGSIGFVGNRQRMNVTITRAKQSLFILGHLRTLREHSDWGALIKDADRRGTI
IKTQEQDFREATTKILKPERSHPHTLTSRRSSNPTSAPQPVHIPVETPTPPIPIPLSCAN
SNGSHSPTVSSTTSGPSDRPRDPRLTTRPSDPRLSEPVREHRQDRERQDPTDPRRLQRHS
QDPRTQRDHYRRSSIPPTHSSSYQSPPPRRRSQDHPHSSTWSSSRPSAPPRSYRR
NT seq
7368 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtgtctgtggtgtagggcattggcggaaagtgatgctgatgtcgctgcgact
ctgcagagctacagcaatggcgggatgacaccaaccgaaaggcaaggtgccaacgatgac
ctcatttactgctcagattgtgtggagaagtaccatgagttgagagaaagagtacctgca
ttgcacgagcggctctgggagattgagacgactcgtctgcttgaggtgttccgcgagatg
tttgatagcgagatggaagaagatgacctgtacttggttgaaaatggcaaggagcagccc
atctctgggatttctctggatgaaattcacgaccggctccgatccccatttatggaagtg
ctgaaatatccttatctgctgtgccaccagggcctctgtgaaatggtggtgaatgttttg
tgtaaaatggaagagttgaacagccctctacatgcttttgagaaatatcaaggaatttat
ctactcatggtgcacccaaatgaaacggttcgtcgctgggcaatagccactgccaagtct
aaaggcagtgtggacagagacagcttttacagccttcaggaggctttcttctgcatgttc
atggtacttgagctgggaatcactctaaaagataaagacgtgaacacattctattctggc
agtctgccgcatcatttacccctgcatctctatgacacagaaaatgaaaagaactactgg
ttaggtatctgtatgttactgatgcagctggactcccaggcgatggagtcattgttcatg
ggcccaaataaacagtgcaacattccccagtgcatcatgaataccatgaaagaagaaaga
aaagggaagaacatggcctcagatccattttggccagctttgcagtgtttcatggtcatt
ctcgaccgactgggctcaaagatctggtgtgagattgacctgccaggtgcttttggaata
atcactcaagcagccagctatgtagctgaagttcaaaacatccgacaaaaaaccaaaggg
acaagagtgaaggaggagcctgacagtgatgactatgacgatgatgacaacatggtgaca
tgcagtcagatggtgtatgatcattaccccacagaccaagcaaacagagcgtcaggctgg
tcatccaatcgcaatgagaagaacatcaatgagattattgaggacatgggttctctggtt
gatggcttgcagtcagagatgggacaaggcattcgtgtgtatggcagcacgtttctttgg
ttcatcccttatgtccgctctgtgatggagctaggtgatcttggcaatagcttcattgat
gaggtaatgcagtacctatacactgaggtaaacaaggatgttctttctggagagacacaa
acctgggataaggtgactgagttcttcattataatcctcattgatataattgagctgctt
ttgggcaaaggctgcatgagaacccttcactactgtgcccccacttgggtgaaggtgatc
gtgcagtgttctatgcttgaaacttgcatcaacgcagtcccaaataggaggagtggttct
tatagggtcacttttgcttcatctgcttttggtaaaagaaaccaaatattggcaaatgga
gtttgtgcagttagtcaagccagcatgaggctgattcgctcactcttgaaggaaggggag
cggattgttaatgtcacagtcacagacttggcaaggtttctggacctccttaatagacac
ttgcgaggaaacaaagtgtgggatcttcaaccctcagactctaaaaatctacagaattgc
ataaccatgctcctgaatgcagtcgtggctagaacagccacaactcctaatgttccatca
gctccacccacatccccagcggatccaccagaaaatgtcatgtatcctagtgccacgttt
actgaccctctgcaggaacctcgattcaaaaatgcagctacaggtccatgtagtgcagtt
aatttcatgaaagaagaaccactgtgtgaggaatacagagattatttctgtgacaacctt
gaagatattaagccaaagaaggaaccttgcagcccagtaccagtttcaaaattacagcct
actctagagttaaatcatttaaagcctgacttcaacaaaataaacgaaatcaaatgcaag
ttgaatgacagttcgaagatacaagcttttaccaagagtaggcttgatccgattgaacaa
aaccaaaatgaacatgggcatttaaaagagactgtaaagataactccttcaagcagcagt
gatacaacctcacagtctacaatctcaaactttgctaaagcagaaaggccttctaaaaag
aaacaggactatgattatgacgacgagccccttaatgtccgaaggagacgcttaaaacaa
actcatgaaatatcatctagtgaaactgaagattcaaaaagtggcattaaaacatccatg
caggtttcaagtcatgcaaaagaagtgtctgatttaatagtcatttcagacgatgaagtt
gctactactgaccaaatattggcaagtgattcctcttcagaaagtccagtcaacagagta
gcatatgaaccttcttcagatcatgacttgaatgagagtccaggtcgggaatatgataat
gattttagtgaatcccaggtatttgagtttgaaacccaagaaaacatcgcttcagcctgg
actgacccatacgttgaccatccagtcaataataaaaagcctaaacgtgactgttcactc
aaaatatctacaagtcctgccactgttgaacctacttcaagctgggttaacaacacacag
ccggtcacagatgaggaaattgagaaagcctgtcaggaagttgaagagcaggtcagtaag
cagcagctacaggatgcgcctacttcaagcacaattgtgccaccaaagccaaagagttct
gctgcgaagtgggacaatttcacaaaacccaaatctgtgcctttacgaagtcccactaag
aaacttgacctgggtgataagaggggccagcaatgttcaaacaaaaaatctcttcttatc
gaaccactagatcgaaaagtcaaaaagcggcgcagctctctcagcaccgcatctactgaa
tgtcctgtttcttcggtcactccctcagccagcatggtatcggagagatcatcttttgtt
tcccgtgattcacgtctgtttccatcccctgccatagtcccaccaaagaagatccgcaaa
gctgttgagccggaatcagtagccgagcgtatggggcttaaaaagaaggagagaaaagca
tttgatctctcgcaacgcactttggacactttgggtgagcttcgcactcacggtcagagt
gtgcatgtcgagcaacctcagaagtcaaaaagggtctgtcgtaagagcaaaccccaaccc
caactgaagctggcagggaaaggtggaaagaagttgcttgcatctcaagatatgcagtac
tttagacagagcaaagggatgcttaagaaatcaacaccagcgaatgcaacactgtccaaa
ccaatcaggaaccatgtgcctaagaaccttcctaagtcaaaacgtacagttgaaaacgtg
cttgaaccaggagaaggtgaggcggaggatgactatgatgaggaggaggatgattatcaa
aagtttcttccctgttctcagcctgatcctgcccgaaagaaccaccaaaatgacagagac
agaaaaaacgtaagtgaatcccataaaataaaacctatattgtttgacgctgaaagtaaa
ggacccagtcccaatcaggttgctgacagaaacgaagactccacagcatccaatactgac
acaaaatgggtaggctattgtgttgatgataaagattatgatgaagatttatggccacta
acacagaatgagtccattgacatggagttatgcactcaaactgaggaaactgaggctaac
tgggagttccctctcacacagagagaccctgtagacatggacattgatatggacagccag
ccccatgcttctgacggaggtcctgatgtgcagactaaacctcagcctgctttcattgtc
caagatgcacctcctgctgctttaattcagaaacctgtagatgagagtgggttattccta
aagcctggcatgtctcctgtttcgcagaaaaaagcgaaaccgtccacaactaaaatctac
gcgcccagttcacgcattgattctttggttggggaaatggaaaaaacgacaaagactaag
gttgtgcgtccaccaccagttataccacctccatcaaaaaccgtaccgcaaccgtgtaaa
ccacagaaggctgtaccacaatcatcagcactgccaaaagccataccacagccctcacca
aaagcagtactgcagtctgattttaaaaagcctcttccgtgccttcgtcgtcctcctcca
gtccagggactcaagtcagcagttcaaaataacattgcttcccatccaccttcctacaag
acctattccagaccagaggaccctgtcgtaaagtcagcagtaactagaaatcaacctcag
tggtttgaccagtctcttctgacccaagccattttgaagtgggagttccgcatgttcgaa
aactacagaggtaatgggctgccggatgatttgtgtccctggccactgaaggaagtgcca
acgacattttctacccacgaggaatatttcagcaccatgtacccacttcttctcgccaat
ttgtttgaggagatggtcagtgaatggcagaggagtgggagagttgaaatttcccttaaa
gttcagggattggagtccaccaatcacaccgctagtttcacagcaagcctgggctctgag
caggagatgaggcagtactatcctaaagaagatgatcttgtgttgctctggctgccaaag
aacaaaagcgcatatgccagtggtgacccagatgtaaatgaacgccatgctagttttggt
tgtgtgtcgcgttcaagtgtaatcaacaatggtgcaggtcaacactcaacattaaatctg
accattcagacgcgggggaatgtgtcctcggtcaatactcagcatgtgcgctgtgaggtg
attggttctttgatcaccactatgcgggagtttcgagcgctatgtcacctaaagagtggc
ataatggctcggccatacatcctccttaagccacatgtctcagtcttcactccctgccag
gagagcctgccggatcttgacatgcctgagtataatacagaccaagcaaaggcgatcagc
tgtggtgtagccatggtgaagagaagacagtatagtgctccaaaaattttgttaattcat
ggccctccaggaactggcaagagcaagaccattgttggccttctgcagagacttttctcc
gaacacaatgacaacattgctgtgaatcgtcacagcaagtctcacagaatgcgagtctta
ctctgcgccccttccaatgctgctattgacaacttgatgaagaaagttatccttgccttc
aaagaaaagtgcagagacatcaactctccacaggggaactgtggagacattaacctggtg
cgactgggcagtgagaagaccatttctaaatcgctgacaggcttcagtcttgacagccag
acttcaaagaaaacacagatgcgtgcagaccctgatgtacagaggcagaagcatagactt
gatcaggctatagaaaatctctcacgccagtgtgccataactcagaaacaatccccggag
tttaaacagttgatggacaagaagcagcactatctttcagaaagggagaaactcagccgc
catttgagagagttccgtagtaaaaggcaggaggtgcaggctggggtcctcagagatgct
cacgtgatctgctgcaccctaagcaccagtggaagccttgtcctggagaccgctttccgt
cgacatggacgagaacccttcagctgtgtcattgtcgatgaggcagggcaggctaaagag
gcagaatcactgattcccctgctccatcgatgtcctgccttgatcctggtgggcgaccct
gatcagctcactcccactgtggtttctcagaaagcaaaagagcttggctatgaccagtcc
ttgatggcgcgactctggaagagccttcacccgtcaaatcccagcatcttcctcagcata
cagtaccgtatgcaccctgacatctgcagcttcccttccaagtacatctacggcaacagg
ctgaaaaatgactgggctggagagtgtctgcagtacaggcatcttcaggcagagcaaagg
cagctttataggtttgggctacggtgggctggtccttgctattgtgagactgctcagaag
cggtgttcggtcaactggccatttgagccctaccgggtgtttgatgtgatggatggaaga
gaaaacaaagaaaatgacagttccttcagcaaccagaaggaggtgaagctgatattgatg
cttctgaagctgattggtgagaaacaggtggtgcgtgtgggcgtcatcacaccctacaat
gcacagaaacagcagatcttaagggctgtcaatgcagaagcgcgaggaaacaaaactctt
caggtggaggtagacacggtggatgggttccagggtcgagaaatggaatgcattattgtg
tcctgtgtaagagccagcagtgaaatgggctctattgggtttgtaggaaatcgtcagagg
atgaacgtaacaatcactagagccaaacaaagcctgttcatattaggacatctccgtaca
ctcagggagcacagtgattggggggctctaataaaggatgcagacagaagagggactata
ataaagactcaggagcaggatttccgcgaagcaaccactaaaatcctaaagcctgaacgc
agccacccacacaccctcacatcccgacgctccagcaaccccacctcagctccacagccc
gtgcacatccctgtggaaacccctacacctccaatccccattccgctaagctgcgccaac
tcaaatgggagccactcccccacagtttcctcaacaaccagtggcccatctgaccgtccc
agagacccccggctgaccacgaggccttcagacccgcgattatctgagccagtcagagag
cacagacaggacagagagagacaggatcccactgacccacgcagactccagcgacactct
caagacccacggacacaaagagaccactaccggcggtcttccataccaccgacccactcc
agctcctatcagtcaccaccaccacggaggaggagccaagaccatccccactcgtccaca
tggtcttcctcacggccttctgcaccacccaggagttacagaagatga
DBGET
integrated database retrieval system
