Astyanax mexicanus (Mexican tetra): 103028388
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Entry
103028388 CDS
T05042
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
103028388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103028388
03036 Chromosome and associated proteins [BR:
amex03036
]
103028388
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
103028388
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103028388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
103028388
NCBI-ProteinID:
XP_022536611
LinkDB
All DBs
Position
1:34662836..34710652
Genome browser
AA seq
1916 aa
AA seq
DB search
MSTEVLRPEPVAGGSRSSGGKLGVLINKLHEFLAVSAEQGSENSLPGHWSGAMAKEFIEQ
QAAARAAEEPSSSSEIKQTRAPRSKRKPLVVTKHSGLNESDVSSESGTEDVMSVNSSEPD
TTCLPKGTVFVLPEPVGNEVRDEFRGPEFRSKRVNKQNRDFLDRRRGGYDMERVNCTACG
QQVNHFQRDSVYQHPALKVLICKSCFKYYMSDDISKDSEGMDEQCRWCAEGGSLIGCDYC
SNAFCKKCVLRNLGRRELSSILEEERKWYCYVCSPEPLMDLVLACDSVLQNLEKMSKRSS
QAAMGRGVGGGRGRSRGGRNAGAGLPAGIAPSQGLCQRMQRVVEMTSSLNQSFTTFINSE
RDEEASEEEDVERARRLVMFRTILRDLREAQGALQDALDRELGSKPAGGRSRARGRPRKG
TATRGAGVTKELVVKLTPVPVQSAPSANANTTTNVDIAAATAKAETRVTRGMKEEKVKGA
ELEVEESVAVGIPIKPEAKVEVATEQRRDVAIVEENSDEDDDDDEGDDEEEENESEDLTL
EEESKRSPRVKTTPRRRRTESVTGAKHAHLEEDSDSDEVPAVLLQTTAGASSEEEGAADS
DGGNQEVRKKCLFGLVKTTPPCQDRNSRKRKLKERSSSSSSTSSSSSTSGSNDSGSKVGR
TVGHPHKMAKTTAASETSSSDLGGQELESAQSSDSEDQDQKIKPLSDVTLLGSGTFHQQS
SGDELDVQPSPSLVLEEDDVENRIAKQILLAQIRANLSSESESESTTDESGNEGVVYKDK
ERLGENVDEKDEEESSATDNSSDSGDSTSAPRRRHQLLRYGLDLKETISEAPNEEPSHPK
RNKKRKNQQPDMIIVSSDDHESTEEELDLSEELSYSEDEDKRGKSSKKALGQKKSNTDGK
DRTPTKQDTADADGEDDDVMVAEEVSCTPRGRRKIRKILEVDELAKETQEALKEEEERRK
RLAERDRQRQEEERREREKEDSEVMIVDERPAPSPLVLEQDATTRQPLLQVDTHLLSKLK
PHQRVGVQFMWDSCCESITKVKESPGSGCILAHCMGLGKTLQVIAFLHTVLSSELVQLKT
ALVVCPLNTVLNWKAEFDKWQCGIKTRKLEVIELVSVKSALCRVEALSSWHQKVAVMIIS
YEMYRILTNGKKSKYAKHHQRLRTALQNPGPDIVVCDEGHILRNETTGIFKAMSSIRTRR
RIVLTGTPLQNNLTEYHCMVNFIKENLLGSQREFRNRFINPIQNGQCADSTPSDVRLMKK
LVHVLHELLAGCVQRRDYSVLTPFLPPKQEYVLSIRMTSLQCELYRHYLQNYTGEGDGVS
RLFQDFQILSLIWTHPWCLQLSDLNKGNKGRVEDSTPVATVASSELSDGQNHSGRALEEK
TSTSSTKGDSVTNAQGHSVEDGRSVSNGPAAGWYKKFVSATDAEILEHSGKLVLLMEILH
MAEQLQEKVLVFSQSLVSLDLIESFLELANKAKRERKDSVYKGNRIWVRDTDYYRLDGST
SATARKKWAQEFNKIRNKRGRLFLISTKAGSLGINLVAANRVVVFDASWNPTYDIQSIFR
VYRFGQRKPVYVYRFLAQGTMEQKIYERQVAKQSLSSRVVDQQQIQRHFTQSQLSELYRF
WPDQHSNTHSSQPKDKVLAVLLQQCGRSIVSFHEHDSLLDHREEEELSVEERRAAWEEYQ
AEETPVRTLQRQDAGERALANILWKKSNKELEPVRTLQRQGAGERALANILWKKSNKELE
DMLKKSRLELQKALKGIESRSLDLYVCEVKKCNPSLSVEEIQQKALQAYEMFERQRQRKI
EIYQSKLQSQQALILYTQQIVAARMKTSSNYTSRDQPTTLVTYSRKASSVHPTHPPQDQE
YHSYSSLGQPINKPSVQPSSSVQPSPAGSSAPVQPGPSSLSSAVRNIRDDFVIELV
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaggttctcaggcctgaacccgtcgctggggggagcagaagcagcggtggg
aaactgggagtgctgatcaataaactccatgaatttctggcagtgtctgcagagcagggc
agtgaaaacagcctgcctggacactggagtggtgcaatggccaaagaatttattgagcag
caggcagcagcacgggctgcagaagagcccagtagctcctcagagattaaacagaccaga
gcacctcgctccaaaaggaagccgttggtggtgacgaagcacagtggactgaatgagtct
gatgtatcgtctgaaagtggaacagaagacgtcatgtccgtcaactccagcgaaccggac
acaacctgcctccccaaaggtacagtttttgtgctgccggagcctgtgggtaatgaagtc
cgtgatgagttccgtgggccggagttccgcagtaaacgggtgaacaaacagaacagagac
tttctggatagacgtagaggagggtatgatatggagagagtgaactgtacagcttgtggt
cagcaggtgaaccatttccagagagactcagtctaccagcacccagctctgaaagtgctc
atttgcaagtcctgttttaagtactacatgagtgacgatatcagtaaagattcggagggg
atggatgagcagtgcaggtggtgtgctgaggggggcagtctaattggctgtgattactgc
agtaatgcgttctgtaaaaagtgtgtcctgcggaacctggggaggagggagctctcttcc
attttggaggaggagaggaagtggtactgttacgtgtgcagccctgaaccactcatggac
cttgtgttagcttgcgactcggttctgcagaaccttgagaagatgagcaaacgctcctca
caagcggcgatgggccgaggtgtgggaggaggcagagggaggtcgaggggcggacgcaac
gcaggggcggggcttccagcgggcatagcaccttctcaagggctgtgccagcgtatgcag
cgagtggtggaaatgacttcatcgctgaaccagtctttcacgaccttcataaacagcgaa
agagatgaagaggcgagcgaggaagaggacgtggagagagcaaggaggctggtgatgttt
cgtaccatactccgggacctgcgggaggcacagggcgcattacaggatgcactagatcgg
gaattagggtccaaaccagcaggagggcgctcgagggcgaggggtagaccacggaagggc
acagcaaccagaggtgcaggagtaaccaaggagctggtggtgaaacttacaccagtacca
gtgcaaagtgcccccagtgctaatgctaacactaccactaatgttgacattgctgctgct
acagctaaggcagagacaagggtcacaagagggatgaaggaggagaaggtgaaaggagct
gaattggaggtggaggaaagtgttgctgttggaataccaataaaaccagaggcaaaagtg
gaagttgccactgagcaaagaagagatgtagcaattgtggaagagaattcggatgaagat
gatgatgacgatgaaggtgatgacgaagaagaggaaaacgaaagtgaagatctgacgtta
gaagaagagagcaagcgctctccccgtgtgaagacgacgccacggcgtcgccgtacagaa
tctgttactggtgcaaaacacgcacatctagaagaggattctgattctgacgaagttcct
gctgtgctcctgcagactacggccggtgcatccagcgaggaagagggtgcggccgacagc
gacggaggcaaccaagaagtacgaaagaaatgcctgttcggcctagtcaaaaccacaccg
ccttgccaagacagaaactcacgcaaacgcaagcttaaagagagatcgtcctcatcatct
tcaacgtcttcgtcctcttcaacttctggttctaacgattcgggatcaaaggtcgggaga
acagtcggccacccccacaagatggccaaaacaacagctgctagcgagacttcttcgagt
gatcttggggggcaggaattggagagtgcgcagagcagtgactcagaggatcaggaccag
aagattaaaccactgagcgatgtcacgctgcttggatcagggacattccaccaacagtca
tctggtgatgagctagatgtccagcctagtccgtctctggtcctggaagaagatgatgtt
gagaatagaattgctaagcagattctgttggctcagatcagagccaatctttcatctgag
tccgaatccgagagcacaaccgatgaaagcggcaacgagggtgtggtgtataaggataaa
gaaaggttgggcgaaaatgttgatgaaaaggatgaggaggagagcagcgccacagacaac
agctcagattctggcgattcaacatcagcgccacggagacgacaccagctgctgcgctat
ggtctggacctgaaggagacaatttctgaagctcctaacgaagaaccttcccatccaaag
aggaataagaagagaaaaaatcagcaaccagacatgattattgtcagcagtgatgaccac
gaatcaaccgaagaagagttggatttgagtgaagagctcagttattcagaggatgaggat
aaaagaggaaagtcatccaaaaaggcacttggtcagaaaaagtcgaacactgatggtaaa
gatcgcacacctacaaaacaggatactgcagatgctgatggtgaggatgatgacgttatg
gttgctgaagaagtcagctgtactccgagaggtcgcagaaagattcggaagattctggag
gtggacgagctggcgaaggagacgcaggaggcactgaaagaagaagaggagaggaggaag
agactggcggagagagacaggcagagacaagaggaggagagaagagaacgagaaaaagaa
gattcagaggtgatgatagtggatgaaagacctgccccatctcctctggttttagagcag
gatgctacgacacgccagcctcttttacaggtggacacacacctgcttagtaaattaaaa
cctcatcagagagtaggtgttcagtttatgtgggacagctgctgtgagtcgattacgaag
gtaaaggagtctccaggttccggatgcattcttgctcattgcatgggcctgggaaaaaca
ctacaggtgatagcatttctgcacactgtgttgtcctctgagctggtgcagctgaagacg
gcactggtggtgtgtcctctaaacacagtcctcaactggaaagcagaatttgacaagtgg
cagtgcggtattaaaacacgcaaactggaggtgattgagcttgtgtcagtgaagtcagca
ctgtgtcgcgtggaggcattaagcagctggcatcagaaagttgctgtgatgatcataagc
tatgaaatgtaccgcatcttgaccaatggaaaaaaatccaaatatgccaaacaccatcaa
aggctacgaacagcactacagaacccaggccctgatatagtggtgtgtgatgaaggtcac
atcctgaggaatgaaacaacgggcatttttaaagccatgagctccatccgcacacgccgg
agaatcgtgctgacaggaacccccctgcagaacaacctcacagagtatcactgtatggtg
aattttataaaggagaacctgctgggttctcagcgcgagttcaggaaccgctttattaac
cccattcagaacggccagtgtgctgactccactccctctgacgtccggctgatgaagaaa
ctggtccatgtcctccacgaactcctcgctggatgtgttcagaggcgggactattctgta
ctaactcctttcctgcccccaaaacaagagtacgtcctgtcaatcaggatgacatcatta
cagtgtgaactgtacagacactacctacagaactacacaggtgaaggagatggtgtgagc
aggttatttcaggattttcagattttaagtttgatttggactcacccgtggtgcttacag
ctatctgaccttaataaagggaacaagggaagggttgaggattctactcctgttgctact
gtggcttccagtgagctgtcggatggacagaaccacagtggacgtgctttagaggagaag
accagcactagttctacaaaaggagactcagtgacaaatgcacagggacactcagtagaa
gacggacggagtgtgtctaatgggccggcggcaggctggtataagaagtttgtgagtgcc
actgatgctgaaattctggagcattctgggaagttagtactactaatggagatactgcac
atggctgaacagctacaggaaaaagtgttggtgtttagtcagtctctagtttcactggat
ttgattgaaagcttccttgagttggctaacaaggcaaagagagagagaaaggattctgta
tataaaggaaacagaatttgggtgcgagatacagattattatcggttggacggctctacg
agtgcaacagcacgcaaaaaatgggctcaggagttcaacaaaatcagaaacaaacgtggg
agattattcctgatctctactaaagccggctcattaggtattaatctggtagctgctaac
agggttgtggtgtttgatgcctcctggaatcctacgtacgacattcagagtatcttcagg
gtctaccgcttcggccagagaaaaccagtttacgtctaccgttttctggcacagggtacg
atggagcagaagatttacgagcgtcaggttgctaagcagtctctgtcgtcccgtgttgtg
gaccaacagcaaattcagcgacactttactcagagtcagctcagtgaactctaccgattc
tggcccgaccagcacagcaatacacacagcagccagcccaaggacaaagtgctggcagtg
ctgttgcagcagtgtgggcggagcatagtaagctttcatgaacatgattcactgttagac
cacagagaggaggaggagcttagcgtggaggagagaagggcagcctgggaggagtatcaa
gcagaggagacgcctgtgaggacattgcagagacaagacgctggagaacgagctttagcc
aacatcctctggaagaaaagcaacaaggaactggagcctgtgaggacattgcagagacaa
ggcgctggagaacgagctttagccaacatcctctggaagaaaagcaacaaggaactggag
gatatgctgaagaaatcccgattggaacttcaaaaggctctaaaaggcattgagtcacga
agtctggacctctatgtgtgtgaagtgaaaaaatgtaacccgtctttgagtgtggaggag
atacaacagaaggctctccaggcttacgagatgtttgaaagacagagacaacgcaagatt
gagatttaccaaagcaaactacaatcacaacaagcactcattctctacacacagcagatc
gtggctgccagaatgaaaaccagctcaaactacaccagcagagatcaacctaccacactg
gtcacttacagcagaaaggctagtagtgtccatcccactcatcctcctcaagaccaggaa
taccactcctacagctcacttgggcagccaattaacaagccttctgtacaaccgagttct
tcagttcagcccagtccagccggttcttcagctccagtgcagccaggtccttccagcctt
tcctctgcggtcagaaacattagggatgactttgtgattgagctggtgtag
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