Astyanax mexicanus (Mexican tetra): 103028448
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Entry
103028448 CDS
T05042
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04140
Autophagy - animal
amex04148
Efferocytosis
amex05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103028448 (vps16)
04148 Efferocytosis
103028448 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
103028448 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103028448 (vps16)
Membrane trafficking [BR:
amex04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103028448 (vps16)
Hops complex
103028448 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF740
Motif
Other DBs
NCBI-GeneID:
103028448
NCBI-ProteinID:
XP_049335111
LinkDB
All DBs
Position
5:37467808..37482265
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AA seq
835 aa
AA seq
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MAFVTANWNPLGEAFYRKTELYEMGWNLKDGLRDCLLAAAPYGGPIALLKEPQRRSPSSR
PQLEIYSASGVTMASFLWKSGVVRQLGWTVCDDLLCIQEDGTVLIYDLFGSFKRHFSMGN
EVGQSQVVEAKVFHSPYGTGVAIVTGASRFTLATNIDDLKLRRLPEVPGLQGAPTCWAVL
TQDRQSKVLVANGGDLFILDYTACTAVNPPGLSPQASSIVHMCVSFSYKYLALFTDSGHV
WMGSANLKEKLSEVETKVRNPPKQMAWCRRPKSRQPSVVIMWDRHLLVVGEGKDTISYHL
EDDSILVPEMDGVRIINGTNHELLQEVPASCEEIFKIASMAPGALLLEAHKEYEKESQKA
DEYLREIKEQGLLAEAVRQCVEAAGHEQEAETQKTLLRAASFGKCFLSNFPPELFVIMCR
DLRVLNAVRDYTVGIPLTHTQFKQMTVQVLIDRLVYRKLYPLAIEICRYLKTPEYQGVSR
VLKHWACCKVQQKEESDEVIARTISLKLGEAAGISYSEIATKAYECGRTELAIKLLEFEP
RSGEQVPLLLKMKRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKHQEQDTLKDLFNQDDDHQELGNFYVKASYKEKRLEARVAHLQSAVDEYNKAKNE
FAAKATEEEMRLLRFQKKLEEEKGESLVGFSLHDTLRTLLAVGLHKHAEQLYKDFKVPDK
RFWWLKLTALAEKEDWEELEKFAKSKKSPIGYLPFVEVCVKHHNKYEAKKYVSRVTPEQK
VKAHLAVGDMEGAADAAIERRNEGEISTILSRCSPTTDRALVERLNRAKSTAAKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgttacggccaactggaacccgctgggagaagcgttttacaggaaaactgag
ttgtatgagatgggctggaatctaaaggatggtctcagagactgtttactggctgcagct
ccctatggtgggcccatagctctgctgaaggaaccacagcgccgctctcctagttcccga
cctcagttggagatctattctgcttctggagtgactatggccagttttctgtggaagagt
ggtgtagtgaggcagctggggtggacagtgtgtgatgacctcctgtgtattcaggaagat
ggcactgttcttatttatgatctttttggcagcttcaagagacacttcagcatgggcaat
gaggtgggacaaagtcaggttgtggaggctaaggtgtttcattcaccctatggaactggt
gtggccattgtaactggtgcatcccgctttaccttggcaacaaatattgacgacctgaag
cttaggaggttacctgaggtgccaggccttcagggggcgcccacttgttgggcagtcctt
actcaggacagacagagtaaagtgctggtggcaaatggtggtgatctctttattctggac
tacaccgcctgcactgctgtgaaccctccaggtctttctccacaggcttccagtatagtg
cacatgtgtgtgtcattcagttacaagtatctggccctgtttactgactctggccatgtg
tggatgggcagcgccaacctaaaggagaagctcagtgaagtggagacaaaagtcagaaat
ccacccaaacagatggcctggtgtcgtcggcctaagagtcggcagccctctgtggtaatc
atgtgggatcgacaccttctggtggtaggagaaggtaaagataccatctcgtatcaccta
gaggacgactctattttggtgccagaaatggatggggttcgaatcatcaacggcacaaac
catgaactcctgcaggaagtgccagcttcctgtgaggagatcttcaagatagcgtcaatg
gctcctggagcactgctgctggaggcccacaaagaatatgagaaagagagtcagaaggcg
gatgagtatctgagagagataaaagagcaaggtcttttagctgaggctgtgaggcagtgt
gtggaggcagcaggacatgagcaagaggcagagacacagaaaacactcttgagggcggcc
tcgtttggaaagtgtttcctgagtaatttccctccagagctgtttgtcatcatgtgccga
gacttgcgtgtgttaaacgcagtgagggactacactgtgggcatccctctcacacacaca
cagttcaaacagatgactgttcaagtgctcatagaccgattagtgtaccgtaaactatat
cctctggccattgagatctgtcgctatctgaagaccccagagtaccagggagtgagtcga
gtcctgaaacactgggcctgctgcaaggtgcagcagaaggaggagagtgatgaggtcatt
gcaagaaccattagtctgaagttgggtgaagctgctggaatctcttactctgagatcgcg
actaaagcctacgagtgtggtcgtacagaactggctataaagttgctggagtttgagcct
cgctctggggagcaggttcctttattgctgaagatgaagaggagccagttggccctcagc
aaagccattgaaagtggagacacagacctagtgtatacagtggttacatatctaaagaat
gagatgaacagaggagacttcttcatgactctgcggaatcagccggtggctctcagcctt
tatagacagttctgtaaacatcaggaacaggacactctaaaggatttattcaatcaagat
gacgatcatcaagagttgggaaatttctacgtgaaagctagctacaaagaaaagagatta
gaggcccgtgtagctcatttacagagtgctgtggatgaatataacaaggcaaagaatgag
tttgctgccaaggccacagaagaggaaatgcgtctgttgcgtttccagaagaagctggag
gaggaaaaaggcgagtctctggtgggcttctccctgcacgataccctccgtactctgctg
gctgtaggccttcacaaacatgctgagcagctctacaaggacttcaaagtgcctgacaag
aggttctggtggctaaagctgactgctctagctgagaaagaagactgggaggagctagag
aaatttgccaaaagcaagaaatctcccattggctatctgcccttcgtagaagtttgtgtg
aaacaccacaacaaatacgaggccaagaaatatgtgtccagggtcactccagagcagaag
gtcaaagctcacctagcagtaggtgatatggagggggctgcggatgctgctatagaaagg
cgtaatgaaggagagatcagcaccattctgtcccgctgttctcccaccacagaccgggct
ctggtcgaacgtcttaaccgtgctaaatccactgctgccaaaaagtga
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