Astyanax mexicanus (Mexican tetra): 103028628
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Entry
103028628 CDS
T05042
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03013
Nucleocytoplasmic transport
amex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103028628 (pnn)
03015 mRNA surveillance pathway
103028628 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103028628 (pnn)
03041 Spliceosome [BR:
amex03041
]
103028628 (pnn)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103028628 (pnn)
Spliceosome [BR:
amex03041
]
Complex C
Other components
EJC/TREX
103028628 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
103028628
NCBI-ProteinID:
XP_007241135
Ensembl:
ENSAMXG00000033067
UniProt:
A0A8B9KSD2
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Position
14:1242378..1254166
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AA seq
739 aa
AA seq
DB search
MAVAVRNLQDQLEKAKESLKSVDENIRKLTGRDPNELRPGQTRRLSITGPGGGRGRGIGI
LRRGLSDGGGGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVVAT
SKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESTVSTDRLKRRQEIEQKLEV
QAEQERKKVESERRELFEERRAKQTELRLLEHKVELAQLQEEWNAHNSKIIKFIRTKTKP
PIFYLPGRMCSATQKLLDESQKKMNAVFDERREAFAEHLNKMEARPRRQPQRAAERGAEE
AGRAEETKKEDGEEEEGKQRVRLTGKRHAVEMEEDEDEEDEEEVGEEEKEQKQREEDREE
REVEMEDEGEREKGKDKEEEEEESKAERDDENNEEEQEQSSAAPVVVVEEEKDDKEEEEK
MEVTEAAAVRVQEENEDDDEDKDEEQEIAGGQAVQIQDQEKSPEAGVVVEEEKEVGSESR
KQEVEKENHQESIAQESQEASESIMDVQPQSEEPFGSSKPSEPSEPTAMEQQSSTFETDS
AMELQKSRPEKESPTEPPLMPQPQELKTSPNKEVEETEQGEEQRGRSGGKARPKRSRSRN
RSSSSSSSSSSSSTSSSGSSSSSSGSSSRSSSSASSSSSSSSRSRDRDTGHSRRRRNSDR
ERKKGERGGERGSGGHKSSKSGGSGGRESKGSKDKSSKSDRKRTSSEGSRAGKRSSRGDR
SERSDRDRDRKSDRKEKRR
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggtgcggaatctgcaggatcagctggagaaggcaaaggagagcctgaag
agtgtggacgagaacatacggaaactcactggcagagaccccaacgagctacggccgggt
cagaccaggcgtttgtccatcacaggcccaggtggaggtagggggcgtggcatcggtata
ctgaggcgtggactctctgatggcggtggaggaccgccagccaaacagagggacatcgag
ggggcactcttgaggctggcgggggatcagagagccaggagagattcacgccatgacagc
gacgctgaggatgatgacgatgtcaaaaaaccggcgttgcagtcatcagtagtagctacc
tccaaggagcgaacgcgccgagatctgatccaagatcagaccatggacgagaagggcaaa
cagaggaatcggcgcatgtttggcctgctgatgggaactctgcagaaatttaaacaggag
tccactgtgtccacagaccggctgaagcgacggcaggagatcgagcagaagctggaggtg
caggcggagcaggaacgtaagaaggtggagagcgagaggagggagctgtttgaggagaga
cgggcgaagcagaccgagctcaggcttctggagcataaagtggagctcgctcagctgcaa
gaggagtggaacgctcacaactccaaaatcataaagttcattcgcaccaagaccaagcca
cccatcttctacctgccgggtcgcatgtgctcagccactcagaagctcctggatgagtcc
cagaaaaaaatgaacgccgtgtttgacgagaggcgtgaagctttcgccgagcacctgaac
aagatggaggctcggcccaggcgtcagccccagcgggctgcggagaggggggcggaggag
gccggccgggccgaagaaacgaagaaggaagatggagaggaggaggagggtaagcagaga
gtaaggctgacaggtaaacgacacgctgtggagatggaggaggatgaggatgaggaggat
gaggaagaggtgggggaggaggagaaggagcagaagcagcgagaggaggatagggaggag
agggaggtggagatggaggatgagggggagcgggagaagggcaaggataaggaggaggaa
gaggaggagagtaaagcagaaagagatgatgagaataatgaggaagagcaggaacagtct
tcagcagcaccagtggtagtggtggaggaggagaaagatgataaggaggaagaggagaaa
atggaagttacagaagcagcagcagtaagggtgcaggaggagaatgaggatgatgatgag
gataaagatgaagagcaggagatagctgggggtcaggcagtgcagatccaggatcaggag
aagagcccagaggcaggagtagtagtagaagaagagaaagaggtaggtagtgagagcagg
aagcaagaagtagagaaggaaaaccatcaggagagcatcgcccaagagtcccaggaagcc
tctgaaagcatcatggacgtccaacctcagtctgaagaacctttcggatcttccaaacct
tccgaaccttcagaaccaactgcaatggagcagcaaagcagcacctttgaaacggatagc
gccatggagctccaaaaatcaaggccagaaaaagaatccccaactgaaccaccactaatg
ccccaacctcaggagctcaaaaccagccccaacaaggaggtggaggagacggagcaaggc
gaggaacagcgcggccgcagcggcggcaaagcccgtccgaaacgcagccggagccgaaac
cggagcagctccagctcctccagcagctcctcgtcgtccaccagctccagcggctccagc
tcgtcttccagcggctccagcagccgcagcagctcctccgcctcgtcttcctcgtcctcc
agctcgcgcagccgcgacagagacaccggccactccaggcgccgcaggaactccgaccgc
gagcgcaagaagggagagagaggcggcgagagaggcagcggagggcacaagtcctccaaa
agtggcggcagtggcgggcgcgagagcaagggctccaaggataagagctcaaagtcggac
aggaaacggacgagctcggaagggagccgggcgggaaagaggtcgtcgcgtggcgaccgg
agcgaacgcagcgaccgcgatcgggatcgcaaatccgatagaaaagaaaagaggcgctag
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integrated database retrieval system