Astyanax mexicanus (Mexican tetra): 103028657
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Entry
103028657 CDS
T05042
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103028657 (ddx39ab)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103028657 (ddx39ab)
Spliceosome [BR:
amex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103028657 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103028657
NCBI-ProteinID:
XP_007229864
Ensembl:
ENSAMXG00000018631
UniProt:
A0A8B9JR83
W5L783
LinkDB
All DBs
Position
3:18645814..18656961
Genome browser
AA seq
427 aa
AA seq
DB search
MAENDVDNELLDYEEDEEPQAAPESATPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALIR
SKTLSLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgacgttgataacgagctgttggactatgaggaggatgaagagccgcag
gcagccccagagagtgccaccccagcaggaaagaaggaggtgaagggttcttacgtgtcc
atccacagctctggcttcagagacttcctgctcaaacctgagctcctgagggccattgta
gactgtggttttgagcatccatcagaagtccagcatgagtgcattccacaagccatcctg
ggcatggacatcttgtgccaggccaagtccggtatggggaagacggcagtctttgtgctg
gccaccctgcagcagatagagcctgtggatggacaggtgtctgtattggtgatgtgtcac
acacgtgagctggccttccagatcagcaaagaatacgagcgcttctccaagtacatgccc
actgtcaaggctgccgtgttttttgggggtctttcaatcaagaaggatgaggaggtgctt
aagaagaactgtccgcacattgtggtgggcacacctggccgaatcctcgctctcatccgc
agcaagacactcagccttaaaaacgtcaagcactttgttctcgatgagtgtgacaagatg
ctggagcagctcgatatgagacgtgacgtacaggatattttcaggctcactcctcatgag
aagcagtgcatgatgttcagcgccaccctcagcaaagagatccggccagtctgtcgcaag
tttatgcaggacccaatggaggtgtttgtggatgatgaaacaaagctgaccctacacgga
ctgcagcagtactactgcaaactaaaagacagtgaaaagaaccgtaaactcttcgatctg
cttgatgtccttgagtttaaccaggtggtgatcttcgtgaagtctgtgcagcgctgtgtg
gctctgtctcagctgctggtggagcagaatttccctgctattgccattcacagaggcatg
gctcaggaggagaggctttcccgctaccagcagtttaaagacttccagagaaggatcctg
gtcgctacaaatctattcggcagaggaatggacattgaaagggtcaacatagtcttcaac
tacgacatgcctgaagactcagacacctacctgcacagggttgcccgcgctggtcgtttt
ggcacaaagggtctggctgtaacttttgtgtctgatgagacggatgccaaaactctgaac
gatgtgcaggaccgctttgaggtcaacgtggctgagctaccagaagagattgacatctcc
acttacattgaacagtcgagatga
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