Astyanax mexicanus (Mexican tetra): 103028778
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Entry
103028778 CDS
T05042
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04010
MAPK signaling pathway
amex04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
103028778 (cacna1ba)
04020 Calcium signaling pathway
103028778 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amex04040
]
103028778 (cacna1ba)
Ion channels [BR:
amex04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
103028778 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
103028778
NCBI-ProteinID:
XP_049326630
Ensembl:
ENSAMXG00000015889
LinkDB
All DBs
Position
22:28657977..28872088
Genome browser
AA seq
2274 aa
AA seq
DB search
MILATIIANCIVLALEQHLPAGDMTPLSQRLDDTEPYFIGIFCFEAGIKIIALGFAFHKG
SYLRNGWNVMDFVVVLTGILTTVGADFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKA
MVPLLQIGLLLFFAILMFAIIGLDFYMGKFHRTCFRIDTGEQAAEFPCGEEAPARTCENG
TRCDSYWIGPNFGITNFDNILFAILTVFQCITMEGWVEILYNANDASGNTWNWLYFIPLI
IIGSFFMLNLVLGVLSGEFAKERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVML
AEEDKNAEERSPLDGAWYKRKCNNPGGNIFEVLKRSKKSKNDLINAEEGEDHFTDISSVA
PQGSPFARASVKSSKLESSSYFRRKEKRIRFFIRRMVKSQGFYWTVLCLVGLNTLCVAIV
HYEQPEWLTYALYLAEFVFLGLFLTEMSLKMYGLGPRNYFHSSFNCFDFGVIIGSIFEVI
WAAVKPGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVV
FALLGMQLFGGQFNFEEETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVKRG
MFSSVYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQEEAISKKLALQKAKEVK
EVSPMSATNISLTAFIRPNGGALSHSSSHSGCDSPNEQRRSLKMMSVWEQRTSQIRKHMR
ASNEALYSEELSPRLASSHQHLRPDLTTHLDRPLVVEPRCWDEARNVPPQDPPPDPLTTD
PAQSHPPRKHHRRRERASDDTQENGETTGNSRDGRRHVHHSRSNRDHEGTRCKEGKGERS
RSREGARRHHHQQGSAEDGRGGEREHRHHHSHRTSREGNGVLSSGGGRSERRSHHRDGSR
SGTWDGERRGEDGTNGGRRKHRQRTCKAQSTLDGEEQMENGEREEGKSPVHRHTEVGGDS
LAATPQQPMMGSRWGLEKPEDSDNQRNVSRTGGLGVHIPVTITSPPGETTLIPMNSIESE
TVPMTEKNLDEVNQSCPRPILPYSSMFIFSQSNPVRRLCHYIVSLRYFEMCILVVIAMSS
IALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGSYFRDLWNILDF
IVVSGALVAFAFSGTKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLN
ILIVYILFMFIFAVIAVQLFKGKFFYCTDESKGLQKDCRGQFLDYDRDEVSAQPRVWKKY
EFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDQGPSPGYRIEMSIFYVVYFVVFP
FFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFAINAKPLTRYMPQNQQSFQYRM
WKFVVSPPFEYSIMIMIALNTVVLMMKFHGAPDFYEAMLKYLNIVFTALFSLECVLKIIA
FGPLNYLKDAWNVFDFVTVLGSITDILVTEINDRLLNLSFLRLFRAARLIKLLRQGYTIR
ILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIDLNEDTAINHHNNFRTFLQALM
LLFRSATGEAWHEIMLSCLSHRACDERSGTHGKECGSDFAYFYFVSFIFLCSFLMLNLFV
AVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYRDMYEMLLHMSPPLGLGK
KCPPRIAYKRLVKMNMPIAEDNSVHFTSTLMALIRTALEIKLASGMVAQRLCDAELKKEL
ATVWPNLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQNRAKRLQMQQQQSKEQTGP
GSQPNKVGALLEPILPLSPMQDKTKNSVVDCPSDPQPHRPGSTTLNNGRTLKSSHDGAIK
GSSSWVSEKTKEIHKSAKRRPISRGQSEDISNTNTAQVSVEMRNMENSANTVAPVGLDGQ
GRAVSMPKLNAEMQRSHSRHSPGTLLAPIPDSPMRRSASTFAPQRPPEVNLNEYTLEKPV
QERTHHHHHHHRCHHRRDRDKKQRSLDRSPSRQPLNSGGTTADLGGGTASTRERGHDRGR
SHERKHHSSTAEKQRYYSCDRYGSREHCPAKPAPASCATSPGEAQETAFSKQGSGWVKGS
PVLLSSGASTPSRGRRQLPQTPLTPRPAVAYKTANSSPVPFTGSQATLTAPPTPGRMSRG
LSEHNALLQCGSSPISPCPVTRICSEPFLGPPPPDHRYNFRPQLFQEPAGQIPWTTGQQI
VILPPPPSQQQQQQQQQQQQPPHGLPNGYHYTLGVPSSDRAPPYYPEAEEDEWC
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
atgatcctcgccaccatcatagcgaactgcatcgtcctggccttggagcagcatttacct
gcgggtgatatgaccccgctgtcacagcgactggacgacactgagccctacttcattggc
atcttctgcttcgaggctggaattaagatcatcgctctaggctttgcttttcataaaggc
tcctacctccggaacggctggaatgtaatggatttcgtggtggtgttgactgggattttg
accactgtgggggctgactttgacttgaggacgctcagggcagtgcgggtcttgcggccg
ctgaagctggtgtctggaattcctagtcttcaagtggtcctcaagtccatcatgaaagcc
atggtgcctctgctgcagattggcctgctgcttttctttgccatcctcatgtttgccatc
attggcctggatttctacatgggcaagttccaccgaacctgcttcagaatcgacacaggt
gagcaggcggctgaatttccgtgtggggaggaagctccagctcggacctgtgaaaacgga
acacgttgtgatagttactggataggccccaactttggcatcaccaacttcgacaacatc
ctcttcgccatactcactgtcttccagtgcatcaccatggagggctgggtggaaatcctt
tacaatgccaacgatgcctcagggaacacctggaactggctctacttcatcccccttatc
atcatcggctcctttttcatgctcaacttggttctgggagttctgtcaggggagttcgct
aaagagcgtgaacgggtggagaagaggcaggagtttctgaagctgcgcagacagcagcag
atcgagagagagctcacaggatacctcgagtggatctgtaaagcagaggaggtcatgctg
gcggaggaggataagaacgcggaggagaggtctcctctggatggcgcctggtacaagagg
aagtgcaacaacccaggtgggaatatttttgaagtgttgaaaagatccaaaaagagcaaa
aatgacctcatcaatgcagaagaaggagaagaccacttcaccgacatctcatcagtcgca
ccgcagggatctccgttcgcccgggccagtgtgaagagcagcaagctggagagctcctcc
tacttccggaggaaagagaagaggatccggttcttcatccgacgcatggtgaagtctcag
ggcttctactggaccgtgctgtgcctggtgggcctgaacacactgtgtgtggctatagtg
cattacgagcagcccgagtggctcacctacgctctgtatttggcagagtttgtgtttctg
ggcttgttcttgactgagatgagtctgaagatgtatggcctcggtcccagaaactacttc
cactcctccttcaactgcttcgactttggggtgattataggaagcattttcgaggtgatt
tgggctgcagtaaaacccggggcctcttttggcatcagtgtgttgcgagctctgcggctg
ctcaggatcttcaaggttacaaagtattggaactctttacgaaacctggtggtctctctg
ctgaactctatgaagtccatcatcagcctgctcttcctcctcttcctcttcatcgttgtg
tttgctctcttggggatgcaactgtttgggggccagtttaattttgaagaggaaactcca
acaactaacttcgacacatttccagctgccatcctgacagtgttccagattttgacagga
gaggactggaatgcagtgatgtatcatggtattgaatctcagggaggagtgaagcgtggg
atgttctcttctgtctacttcatcgtcctcactctgttcggaaactatactctcctgaac
gtcttcttggccattgctgttgacaacctcgccaatgcacaggaactcactaaggatgag
gaggagcaagaggaggccatcagtaaaaagttggccctgcagaaagcgaaggaggtgaag
gaggtcagccccatgtcggccactaacatctccctcacggcttttataaggccgaatgga
ggtgcactgtcgcacagctcctctcactccggctgtgattcacctaacgagcagcggcgc
tctctgaagatgatgtcggtttgggagcagcgtacctctcagatccgtaagcacatgagg
gcgagcaacgaggcgctgtactccgaggagctcagcccccgtctggcctccagccaccag
cacctccgccccgacctcaccacccacctggaccggccgctggtggtggagcctcgctgc
tgggacgaggccaggaatgtgccgccccaggacccgccccccgaccctctcacaacggac
cctgcgcagtcgcatccgccccggaagcaccaccggcgacgggagcgggcatccgacgac
acgcaggagaacggagagaccaccgggaactcgcgggacggccgccggcacgtccaccac
agtcgcagcaacagagatcatgaggggacgcggtgcaaagagggcaaaggggagcgcagc
cgcagtcgggagggggcgcgacggcaccaccatcagcagggctcggcggaggacggcagg
ggcggagagagggagcacaggcaccaccactcgcacaggaccagccgggaggggaacggc
gtcctgagcagcggcggcgggaggagcgagagacgctcccaccacagagacgggtcgcgc
tcggggacatgggacggagagagacgaggggaggacgggacaaacggaggcaggaggaaa
caccggcagagaacctgcaaggcccagtccacgctggacggagaggaacagatggagaac
ggagagagggaggagggaaagtctccagtacacaggcacacagaagtgggcggagactct
ctcgcagccactcctcagcagcctatgatggggagcaggtggggtctggagaaacctgag
gattcagacaaccaacgaaacgtcagtcgcacaggggggctcggagtccacataccggtt
accatcacctctccaccaggggagaccacgctcatacccatgaacagtattgaaagtgag
accgtgcccatgaccgagaagaacctggacgaggtgaaccagagctgccctcgccccatc
ctgccttacagctccatgttcatcttcagccagtccaacccggtaagacgtctgtgccac
tacatagtcagtctgcgctattttgagatgtgtatcctggtggttatagctatgagcagc
attgctctggctgcagaagatccggtccaggccaacgccccgcgcaacaacgtgctgaag
tatttggactatgtcttcactggtgttttcacgtttgagatggtgattaagatggtggat
ctgggcttgctgttgcatcctggctcttacttcagggatctgtggaacattctggacttc
attgtggtcagtggagctctggtggcgttcgctttctcagggaccaaagggaaggacatc
agcaccatcaaatctctcagggtgttgcgagtcctgcggccactgaagaccatcaaacgc
ttaccaaagctgaaggctgtctttgactgtgtggtgaactccctgaagaacgtgttgaac
atcctcatcgtctacatcctcttcatgttcatcttcgccgtcatcgccgtgcagctcttc
aagggcaagttcttctactgcacagacgagtctaaaggactgcagaaagactgcaggggg
cagtttctggactatgatagagatgaggtttcagctcagcccagagtgtggaagaagtac
gaattccactacgataacgtgctgtgggccttcctcacactcttcaccgtttccacaggg
gaaggctggccaactgttttgaagcactctgtcgatgctacctttgaagaccagggtccc
agtccaggctaccgtattgagatgtccattttctacgtggtttactttgtcgtcttcccc
ttcttcttcgtgaacatcttcgtggccttgattatcatcacgttccaggagcagggggat
aaggctttgtctgagtgcagtctggagaagaatgagagagcctgtattgactttgccatc
aacgccaagccgctgacccgctacatgcctcagaaccagcagtccttccaatacaggatg
tggaagttcgtggtgtcgccgccatttgagtactccatcatgatcatgatcgccctcaac
actgtggtcctcatgatgaagttccacggtgccccagacttctatgaggcgatgctgaag
tacctcaacattgtcttcacagcgctcttctcactggagtgcgtgctcaaaatcattgct
ttcggccctttgaattacctgaaggacgcttggaacgtgttcgactttgtgacggtgctg
gggagcattaccgatattctggtcaccgagattaacgaccgtctgttgaacctgagcttc
ctgaggctcttccgggcggcgcgtctcatcaagctcctccggcagggctacaccatccgc
atcctgctctggaccttcgtccagtccttcaaggctctgccttatgtttgccttctaatc
gctatgctgttcttcatttacgccatcataggaatgcaggtgtttggaaacattgatctg
aatgaggacactgccatcaaccatcacaacaactttcgcaccttccttcaagctctaatg
ctgctcttcaggagtgctacaggggaagcctggcacgagatcatgctgtcctgcctcagt
caccgagcgtgcgacgagcgctccggcacccacggcaaggagtgcggcagcgacttcgcc
tacttctacttcgtctccttcatcttcctctgctcctttctgatgcttaacctctttgta
gccgtaatcatggacaatttcgaatacctgacaagggactcctccatcctgggccctcac
cacctggacgagttcatccgagtgtgggctgagtacgacccggccgcttgtggccgtatc
aagtaccgcgatatgtatgagatgctgctccacatgtccccacctttaggtttgggaaag
aaatgtccgccacgaatcgcctacaagcgtctggtgaagatgaacatgcctatcgctgag
gacaactcggtgcacttcacgtctacgctcatggccttgatccgcactgccctggagatc
aagctggcttcaggaatggtggcgcagcgtctgtgtgacgcagagctgaagaaggagctg
gccaccgtctggccaaacctctcccagaagaccatggacctgctggtgactccacacaag
cccaatgagctcacggttgggaaggtgtacgctgctctcatgatctttgactactacaag
cagaacagagctaagagactgcagatgcagcagcagcagtccaaagagcagacaggccct
ggatcacagccgaataaagtgggagctctcctggagcccatccttcctctgtctcccatg
caggacaaaaccaagaacagtgtggtggactgcccctcagacccccagccccacagaccc
ggctccaccacgctcaacaacggacgcacacttaaatccagtcatgatggcgccatcaaa
ggttcctcatcctgggtgtcggagaaaaccaaagagatccacaagtctgccaagaggcga
cccatctccagaggccagtctgaagacatctccaacacaaacactgcccaggtgtcagta
gagatgaggaatatggagaacagtgccaacactgtagcacctgttggtttagatggccaa
gggcgtgcagtttcgatgcccaaactcaatgcagagatgcagagaagtcattcccgccac
tctccaggaactttactagcaccaattcctgattctcctatgaggcgctcagcttccacg
tttgcgcctcagcgccctccagaggtaaacctaaacgagtacaccctggagaagcctgtt
caggaacgaacacaccaccatcaccatcaccaccgctgccaccaccgcagagaccgagac
aagaagcagaggtcactggacaggtcacccagtcgccagcctctgaacagtggaggcacc
acagctgaccttgggggtggtaccgcctcgacacgagagagggggcacgatcgaggccgt
tcccatgagaggaagcaccattcgtccaccgccgagaagcagcgctactactcatgtgac
cgctatggcagccgggagcactgccctgccaaacctgccccagccagctgtgccacctcc
cctggagaggctcaggagaccgccttcagcaagcagggcagtggttgggttaaagggagc
ccggtgttgttgagctcgggggcgagcacgcccagccgtgggcgcaggcagctgccccag
acgcccctgaccccgcgccccgcggtggcctacaagaccgccaactcctcccctgtgccc
ttcacgggctcccaggccaccctgaccgcccccccgacccccggcaggatgagccgcggg
ctgtccgagcacaacgccctgctgcagtgcggctccagccccatctctccctgtcccgtc
acccggatctgctctgaacccttcctgggcccgcccccgccggaccaccgctacaacttc
cggccccagctcttccaggagcccgcgggccaaatcccctggaccacagggcagcagata
gtgatcctccctcctcccccatcccaacaacaacagcaacaacagcagcagcagcagcag
ccgccccacgggctgcctaatgggtaccactacacgctgggcgtccccagcagcgacagg
gccccgccctactacccagaagcagaggaagacgaatggtgctag
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integrated database retrieval system
