Astyanax mexicanus (Mexican tetra): 103028898
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Entry
103028898 CDS
T05042
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein isoform X1
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103028898 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103028898 (nfrkb)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
103028898 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
103028898
NCBI-ProteinID:
XP_022531777
Ensembl:
ENSAMXG00000006111
LinkDB
All DBs
Position
17:complement(9519773..9538736)
Genome browser
AA seq
1279 aa
AA seq
DB search
MDSLAHMLTDPLDSGMDNDGCLMEECMLGNCRVRIPEDLLEDPDIFFSVMSESTWSEVLT
DAQRQKLRQLLPQFPENNASEQDGVISDLFNNQNFCFGNPLHLAQKLFRDGYFNPEVVKY
RQLCAKSQRKRHIYSLQQYYHKLLKQILVSRKELLDLAVCGGPELAVKRRYTVPSHKEVQ
EQRVRSRVGRILRDVKTECGDSNVSSDDDDTTSWMAVPPSPSSPTPTISLRVLPSLSTQD
MKTRDKAELGEKDLKTMLKRHREKRKLQPDHPDLMTSDLQLGDIMSRVNIGRKGSIMALS
DLALPKKKIKEEKKRRKMRPIKTECDDGYDGQTPAASMVTDMSDNATASLQSVKEEPMEE
SQSCPDMVEEIAISFFNLLEDILRQDPLQSSSVVEEKVQQWQASPASALNPWFSMAPCWS
ELVVPALQFLAGENKAGAMALPSGFAPYVEFKEQTQQWKWIGLPQDSEKDLSALCLLWLE
SKDHVVVKQEGEEAAELTPPAPRVWTDYVVRPSTGEERHVFQEQEQQRYDQPHKAFTFRM
HGFESVVGPVKGVFDKETSLNKAREHSLLRSDRPAYVTILSLVRDAAARLPNGEGTRAEI
CELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRDRSQEEFE
RIHQAQAAAAKARKALQQKPKPTPKPKSGNKETGGKSGAAEGQCSVPEGPSIPAAASLPQ
PPSTPTPSTPGTPKSPLPPTVATPLKAGIPDPVKSSSSVLLVSPPSMPQLGTLLSAGQVA
PQASQQASVQPATRVVAHSATGGSLPQVRVVTAQPGLPTVSAGQTATLVHQTPHHIRVPV
TVAHSKGIAQAVVTLPLRSQSAGSPVQVQASRTQTGLSVPGLASAVAVTKTQTSSPGSPA
HNTAAPAVLQGVTSQNIIKQVAITGQLGVKTQNAPGIPLTATNLRIQGKDVLRLPPSSIT
TDAKGQTVLRITPEMMATLKLTPDMLTSTASTSAKGISATLHVTPPQTSSPVVSSPATPA
AAEALAGKATSSSLGPPGAATIVKVHPELKATCDTAIRLMPSESKAGGTTIRIVPNLGVI
PQKQGQTVTVNTTTTSAKPVTASSGAATVTIATSGVAGAKSVTLGPAAAGSPLSLGTAAA
TVRQVPVSATVVGTQQGKLPARITVPLSVLSQPLKSKSVVTTPILKGSISTNISNLGRNI
ILTTMPAGTKLIAGNKPVSFVTAQQLQQLQQQGQATQVRIQTVPAVQLQQRSAASSPKST
VSTVVVSTAPSPKTNPDPQ
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggactctttggctcatatgctgaccgacccactggactcagggatggacaatgatgga
tgtttaatggaggagtgcatgttggggaactgcagagttcgtattcctgaagaccttctg
gaagatccagacattttcttctctgtgatgagtgaaagtacctggtctgaggtcctgact
gatgcccagaggcagaagcttcgtcagctcctgccacagtttccagaaaataacgcttca
gaacaagacggggtcatcagtgacctttttaacaaccagaacttctgctttggaaaccct
ctgcaccttgcccagaaactattcagagacggctactttaacccagaggtggtgaagtat
aggcaactttgtgcaaagtctcagagaaaaaggcacatctactccctccagcagtactac
cacaaacttctcaagcaaattcttgtctccagaaaggaactgttggatctggctgtttgc
ggtggtcctgaattggctgtaaaacgacgctatactgtcccctcccacaaggaggtgcaa
gagcagcgtgtgaggagcagagtgggccgtatactgcgggacgtgaaaacagaatgtggg
gacagtaatgtttcctctgatgatgatgacacgacatcatggatggcagtgcctccatcc
ccatcttcaccaacaccaacaatctctctcagggttttgcctagtctctcaacccaggac
atgaaaaccagagacaaggcagagctgggggagaaggacttgaaaaccatgttaaaaaga
cacagagagaagaggaaactccaaccggatcatcccgacctaatgacatctgaccttcag
cttggtgatatcatgtcccgtgtaaatataggcagaaaaggatccattatggctttgtct
gacctggctttacctaagaagaaaattaaggaagaaaaaaagagacggaaaatgagacct
attaaaacagaatgtgacgatggctatgacggtcaaacaccagcagcgtctatggttact
gacatgtctgacaatgcaactgcaagtctacagagtgttaaagaagaacccatggaggag
tctcagagctgccctgacatggtggaggaaatagccattagcttctttaatctgctggaa
gacatccttagacaggaccccctgcaatcctcttccgtggtagaggagaaggtgcagcaa
tggcaggcctctcctgccagtgctctcaatccttggttctctatggccccctgttggtct
gagttagtagtgcctgctttgcagttcttagcaggggaaaacaaagctggcgcaatggca
ctacctagtggatttgctccttatgtggaattcaaagaacaaacacagcagtggaaatgg
attggtcttcctcaggattcagagaaggatcttagtgcactctgtcttctttggctggag
tcaaaagatcatgtggtggtcaagcaagaaggggaagaagcagctgagctaactcctcca
gctcccagagtgtggactgattatgtggtgaggcccagcacaggagaagagcggcatgtt
tttcaagagcaggagcagcagcgttatgaccagcctcacaaagccttcaccttccgcatg
catggctttgagtctgtggtggggccggtcaagggagtgtttgataaggagacatccctc
aacaaagctcgtgagcactctctcctgcgctctgaccgaccagcctatgtcaccatcctc
tccttggtgcgggatgcagctgccaggcttcctaacggtgagggaacccgggctgaaatc
tgtgagctgcttaaggattcccagttcctggcccctgatgtcaccagtgcccaggtgaac
acagttgtgagtggtgctctggatcgtcttcactatgagaaggacccgtgtgtgaaatac
gacatcggccgcaagctgtggatttatttgcacagagaccggagtcaagaagagtttgag
aggatccaccaggctcaggctgctgccgccaaggctcgaaaagccctgcagcaaaagccc
aaacccacccccaagcctaagtctggcaacaaggaaacaggtggtaagagtggagctgcg
gagggccagtgctcggtgcctgagggaccttcaatacctgctgctgctagcttaccccaa
ccacccagcaccccaacaccaagcacccctggtacaccaaaatccccactacccccgact
gtggcaacaccactcaaagcaggcattccggaccctgtcaaatccagctccagtgtactg
ctggtgtctccaccctccatgcctcagctgggcactctgctctctgctggacaggttgcc
ccacaggcctctcagcaggcttcagtgcagcctgcaactcgagtagtggctcactctgcc
acaggaggctctctgcctcaggtccgtgtggtcactgctcagccaggccttcccactgtc
tctgctggccagacagccacactggtgcaccagacgccccaccatatcagagttcctgtt
acagtggcccacagcaaggggattgctcaggctgtggtgactctgcctttaaggagccag
tctgcaggaagtcctgttcaggtgcaggcctcacggacccagactggcctgtctgtccca
ggcctggcctctgctgtggcggtcactaaaactcagactagctctccaggaagccctgct
cataacactgcagcacctgctgttctacagggggtcactagccagaacatcattaaacag
gttgccatcactggtcagcttggtgtgaagacccagaatgcaccaggtattcctctgacc
gccaccaacctgcgaattcagggcaaagatgttctacgattgccaccctcctccatcacc
accgacgctaaaggccagactgttcttcgcatcactcctgaaatgatggccactctcaaa
ctcaccccagatatgctgaccagtactgccagcacttctgccaagggcatctccgccacc
ctgcacgtgaccccaccacagacctcttcccctgttgtctccagtcctgccacaccagca
gctgcagaggccctggctggcaaagccacctcctcctccctgggccctccaggagctgcc
actattgtgaaggtgcaccctgaactaaaggccacgtgtgacactgccatccgcctcatg
ccctcagaatccaaagctggtggcaccaccattcgcatagtgcccaacctgggagtgatt
ccgcagaagcagggccagactgttacagttaataccaccactacaagcgccaagcccgtt
acagcctcctcaggcgcagccacagtcaccatagctaccagcggtgtggcaggagctaaa
agtgtgacgctgggccctgcagctgcaggctctcctctttcattgggcactgctgcagcg
acggtccgacaggtgcccgtgagtgctacggtcgtgggcacgcaacagggaaagcttcct
gcaagaatcacggtgcctctctctgtccttagccaacctctgaagagcaagagtgttgtc
actacacctatattgaaaggcagcatcagtacaaacatcagtaatctcgggaggaacatt
atcctgacaacaatgccagcaggcaccaagctcatagccgggaacaaacctgtcagcttt
gtcacagctcagcagctgcagcagctccagcagcagggccaggccacacaggttcgcatt
cagaccgttccagctgtgcaactgcagcagcgctcagcagccagttcccctaaatccaca
gtgtctactgtggtggtctccactgctccctcccctaagacaaaccctgacccacagtga
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