Astyanax mexicanus (Mexican tetra): 103028919
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Entry
103028919 CDS
T05042
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103028919 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103028919 (hbs1l)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103028919 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
103028919
NCBI-ProteinID:
XP_007257903
Ensembl:
ENSAMXG00000004260
UniProt:
A0A8T2LG06
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All DBs
Position
13:complement(44353407..44411641)
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AA seq
674 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDIYGQSVDDDYCISPATAAQFIYSRQDSRQARQVEPLEEEE
NEEEEEMPTSPTAEHMLDPLEQGRLYSCLDQMRTVLGDSVPDSTLTQAALKNDCDPHRAL
DSILSSESSSSQKTTAPKTITQPEPTAAPPPQKAKPRDAPENRLEAEVVPKVARMTVSGK
KQTMGFDVPSSEENGVTPSVRRGPSPETPSKPANVVEESVTPAPPRSTSKSKQQLNIRAE
LEQRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKAGKASFAYA
WVLDETGEERDRGVTMDVGMTKFETSSKVVTLMDAPGHKDFIPNMITGAAQADVAVMVVD
ASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWQQERFQEITSKLGHFLK
QAGFKESDVYYIPTSGLSGENLTTKSKEAELTAWYSGPCLLEQIDSFIAPQRSVEKPFRL
CVSDVFKDQGSGFCVTGKIEAGYIQTGDKVLAMPPNETCTVKGITLHDEPLDWAAAGDHV
SLTVTGMDIIKINVGCVFCDTKEPIKACSRFRARILLFNIEVPITQGFPVLLHYQTVSEP
ATIRKLVSILHKSNGEVLKKKPKCLTKGQNAVVEIQTQRPVALELYKDFKELGRFMLRYV
GSTIAAGVVTEIKE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccacaggaatgtccggggctataactacgacgaagattttgaagatgatgac
atttatggacagtcagtggatgatgattactgcatctcccctgctacagctgctcagttt
atctactcacgtcaggactcgagacaggctcggcaggtagagccactggaggaggaggaa
aatgaagaagaggaggagatgccaacctcacctaccgccgaacacatgcttgacccattg
gagcaaggtcggttgtactcctgcctggaccagatgaggacggtgctcggagactcggtc
ccggactccactctgacccaggctgccctgaagaacgactgcgacccccaccgagctctg
gactccattctctcttcagaaagcagcagctcgcaaaaaacaactgcacccaaaaccatc
acgcaaccagagcccaccgcagctcccccaccacagaaagctaaaccccgtgatgctcct
gaaaaccgcctggaagcagaggtagttcctaaagttgcccggatgactgtctctggaaag
aagcagactatgggctttgacgtgccaagctcagaggaaaatggtgttaccccctccgta
cgcagaggtccgagcccagagactccgtctaaacctgcgaatgtggtggaggaatctgtg
acccctgcaccgccacgctcaaccagcaagagcaaacagcagctgaacatccgggcagag
ctggaacagagacagggcggaaaaccactcctcaacctggtcgttataggccacgtggat
gctggtaagagcactctgatgggtcatctgctgtacctgttggggaatgtgaataagaga
accatgcataaatacgagcaagaggcaaagaaagctggaaaggcctctttcgcttatgcg
tgggtactggatgagacaggagaggagagagacagaggtgtgaccatggatgtggggatg
accaagtttgagaccagctccaaagttgtgactttaatggacgcaccaggacacaaagac
ttcattcccaacatgatcactggagcagcacaggctgatgtagctgttatggtggtggat
gccagtcggggggagtttgaagccgggtttgaagcaggtgggcagacgagagagcacgcc
ctgctggtccggtctctcggcgtcacgcagctcgctgtcgctgtcaacaagatggaccag
gtgaactggcagcaggagaggttccaggaaatcacttccaaactcggtcactttctgaag
caggctgggttcaaggagtctgatgtttattacatccctaccagcggcctgtccggagag
aatctcaccaccaagagcaaagaagcagagctcactgcctggtacagtggaccgtgtctg
ctggaacaaatagactcatttatagctcctcagaggtcggtggagaagcctttcagactc
tgtgtctcagacgtctttaaagatcagggttctgggttctgtgtgacggggaagattgaa
gctgggtacattcagactggagacaaagtcctggccatgccgcccaatgagacctgcact
gtgaaaggaattactcttcatgatgaaccattagactgggcagctgcaggtgaccacgtc
agtctgacggtcacagggatggacatcattaaaattaatgtgggatgcgtgttctgtgac
acaaaggagcctattaaagcctgttctcgtttccgggcccgaattctgctgtttaacatc
gaagtccctataacacaaggctttcctgttctgttacactatcagacagtgagtgagcct
gcaaccatcaggaaactagtcagcatattgcacaaaagcaatggagaggttctgaaaaag
aaaccaaagtgtttaactaaaggccagaacgctgtggtggaaattcagacgcagagacct
gtggctttagagctttataaggactttaaggaactgggccgcttcatgctccgatacgtt
ggctctaccatcgctgctggagtcgttacagagatcaaagagtga
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