Astyanax mexicanus (Mexican tetra): 103028968 Help Entry 103028968         CDS       T05042                                  Symbol skiv2l Name (RefSeq) helicase SKI2W   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism amex  Astyanax mexicanus (Mexican tetra) Pathway amex03018   RNA degradation Brite KEGG Orthology (KO) [BR:amex00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     103028968 (skiv2l)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:amex03019]     103028968 (skiv2l) Enzymes [BR:amex01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      103028968 (skiv2l) Messenger RNA biogenesis [BR:amex03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      103028968 (skiv2l)   mRNA degradation factors    3'-5' decay     Ski complex      103028968 (skiv2l) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk DUF3516 Motif Other DBs NCBI-GeneID:  103028968 NCBI-ProteinID:  XP_022538822 Ensembl:  ENSAMXG00000011517 LinkDB All DBs Position 3:36998526..37028967 Genome browser AA seq 1249 aa AA seqDB search MDKLELPPPGPDDLPLSLLEMGCSGRFELLTHSLPSNKPIQPQNTLPHGLPPTNVDLKME VEKRFLQDPAWMPIHDTTDAFQKFLKLTKRDRQVDSLLHCSLSPLHSSLSVVRDPTTGML LDFTEVLLEHTGLSAKNSFSLQRQPGPPAESLRGSNTNYPFLPGGMEELTLEQIKKKSEL EEDIDFEHDLLAVPPGLKTGMDFSDKEAKTTKGEVNLLSLLSTFDDIIDQMPEEKDKDKK SGESSKLSRTNSLEDLGIKDTQSSFTPPKTSQADKTAEMKKKETEAKKERKWAVPVDISC PCDDFYKRIPDPAFKYPFELDTFQKQAILRLEVHDSVFVAAHTSAGKTVVAEYAIALSQK HMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEASCLIMTTEILRSMLYNGS EVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIK KKPIYVISTVKRPVPLEHYLYTGNSTKTQKELFLLLEATGSFLTKGYYAAVEAKKERTSK HAQSFGAKNAAHNTTLSQDRAIWQTLLNYLSQRQQTPVVAFTFSRTRCDDNSRSLNSLDL TSSVEKNEIHSFFHKSLSRLRGGDRQLPQILVMRDLLKRGIGVHHSGILPILKEVIEMLF SRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDA TGTVIILCKSGVHDMGDLHAMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFS ENHRDTQTHEKRISELRTLLSSLPPLDTEGQLSDLLQYYHTVNELRLTTEALQQAVMESM NGLKALSVGRVVVVNNTQHFNALAVILQVSNDSVNRMFTALIICEKGNEETSETTQLNRG FRHLHNTSLFIPEGPCSHTVQKLKAQDISAITVKTLKVIPERIIDNYNKRQQPRFRMDPP GQAISTATQELLRLAEANPDGITSLDPVNDLHLKGVDVVEGVMRQRVIQDCLKDFQCTHS PTFNEQFARVQERMGLQEELDRLLFLVSDMSLTLLPEYNQRIKVLKELKYIDESDAVQLK GRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIEPHIPNTIQEGIDR VLCVAQRIGELQRECGIAQTAEDYVSQFKFGLTEVVYCWARGMPFAEIAMLTDVQEGTVV RCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH NT seq 3750 nt NT seq  +upstreamnt  +downstreamnt atggataagttagaattacccccgcctggtccagatgacttacctctctcgttgctggag atgggctgttcagggaggtttgagctgctcacacattcattacccagcaacaagcccata caaccacaaaacacactccctcacggacttccacccaccaatgtagacctgaagatggag gtcgagaagcgttttcttcaggatcctgcatggatgcccatccacgacacaacagatgca ttccagaaatttctgaagctgaccaagagggacagacaggtggactctttgctgcactgc tctctctctcctttacactccagcctgtctgtagtgagagaccccacaactggcatgctg ttggacttcactgaggttttactggagcatactgggttatcagcaaagaattcattttcc ttgcaacgacagccaggacctcccgcagagagcctgagggggagcaacacaaactaccct tttcttccaggtggtatggaggaactgacattagagcagataaagaaaaaatctgagctg gaggaggacattgactttgaacatgatttactggcagtaccaccaggtctaaaaactggc atggacttcagtgacaaagaagccaaaaccaccaaaggtgaagtgaacctgctctcgctc ctttccacgtttgatgacataattgatcaaatgcccgaggagaaagataaagacaaaaaa agtggagagtcttcaaagctttccagaaccaacagtctggaggatctgggcattaaggac acacagagttcctttactccgcctaaaacctcacaagctgacaaaactgcagagatgaag aaaaaagaaacagaagctaagaaagagagaaagtgggcggtacctgtggacatcagctgc ccctgtgatgatttttacaaaagaattcctgaccctgcttttaagtatccgtttgagctg gacacttttcagaagcaggccatcctcaggctggaggttcatgactctgtgtttgttgct gctcacacctcagctggcaagactgtagtagctgagtatgccattgcactctcccagaaa cacatgaccaggaccatctacacttcccccattaaggctttgtccaatcagaaattcagg gactttaagaacacgtttggagatgttggccttttgactggagacgtccagttgaaccct gaggcctcctgcctcatcatgactactgagatattgaggtcaatgctctataatggctca gaggtgattcgcgacttggaatgggtcatttttgatgaggttcattacatcaatgatgca gagaggggtgtagtctgggaggaggtgctgatcatgttgcctgaacatgttagcataatt ttgctaagtgctacagtgcctaatgcagtggagttcagcgaatggattggacgaattaag aagaagcctatctatgtgatcagtactgtgaagaggccagtgcccctggagcattacctc tacacaggaaacagcaccaagactcagaaagagctcttcctgctactagaggccactgga agcttccttactaaagggtactatgcagctgtggaggctaaaaaggagcgcaccagtaaa catgctcagtcttttggtgcaaagaatgcagcgcataacacaacactcagccaggaccga gccatatggcagacgctgctgaactacctgtctcagagacagcagacaccggtggtggct ttcactttctcccgtacacgctgtgatgacaacagtcgctctctgaactccctggatcta accagctctgtggagaagaacgagatccactcattcttccataagagcctgagcagactc agaggaggagatcgccagctcccacagatcctggtgatgagggacttgctaaaaagagga atcggagtacatcacagcggcatacttccaatcctgaaagaggtcatcgaaatgctgttc tcaaggggtctggttaaggtcctctttgccacagaaacctttgccatgggtgtgaacatg cctgccaggacggtggttttcgacagcattcgcaagcatgacggaactggcttcagaaac ctccttcctggtgaatacattcaaatggcaggaagggcaggcaggagagggttggatgcc acaggcactgtcatcatcctttgtaagagtggtgttcatgacatgggtgacctgcatgcc atgatgttgggtaaaccgactgtgttacagtctcaattcagactgacttacaccatgatc ctcaacctgttgcgagtggaggccctcagagtgactgacatgatgcgcagaagcttctct gagaaccatagggacacacagactcatgagaaaagaataagtgaattaaggactctgctc tcctccctccctcctctggacacggagggtcaattatcggacttgctccagtattaccac actgttaatgaactacgcctcacaacagaagccctgcagcaagcagtaatggagtcaatg aatggtctgaaggctctgtctgtgggccgggtagtcgttgtcaacaatacacagcatttc aacgccctagctgtcattttacaggtgtctaatgattctgtaaatcggatgttcactgcc ctcatcatatgtgagaaagggaatgaggaaacctctgaaactactcaactgaacaggggt ttcagacacctccacaacaccagccttttcattcctgaggggccctgcagtcacacagtg cagaagctgaaggcacaggacatctctgctatcacagtaaagaccctgaaggtcattcca gagagaatcattgacaactataacaaaagacaacagccccgcttcagaatggacccacct ggccaggccatatccacagcaactcaggagcttctgcgtttggcagaggccaacccagat ggcatcacttcgctggaccctgtgaatgaccttcacctgaagggagtagacgtggtggag ggagtgatgaggcagcgagtgatccaggactgtctgaaagacttccagtgcacacactcc cccaccttcaatgaacagtttgcacgtgtgcaggagaggatgggtctacaggaggagctg gataggctgctgtttttggtgtctgatatgtcccttactcttctgccagagtacaatcag aggattaaggtgctgaaggagctgaagtacattgatgagagtgatgccgtgcagctgaag ggcagagtggcgtgccagatcagtagtcacgagctgctgctgacagagctgctgtttgaa aacactctgagtcctctagctccagaggagagcgctgccctgctgtcctgcctcgtcttc acacagaacacacagatagagccacatatccccaacactatacaggaggggattgaccgg gtgctgtgtgtggctcagagaattggtgagctgcagagggaatgtggaatcgcacaaaca gctgaagactatgtgtcccagttcaagttcggcctgactgaggtggtatactgctgggcc agaggcatgccctttgctgagatcgccatgctgaccgatgtgcaggaggggacagtggtc cgctgcattcagagactggacgaggtactgaaggaggtgaggcaagccgcccgaattgtt ggagactccgtgctgggaagcaagatggagagagcatcactggccatccgcagggacatc gtgttcacagcctctctctacacacactga

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