Astyanax mexicanus (Mexican tetra): 103029187
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Entry
103029187 CDS
T05042
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03020
RNA polymerase
amex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103029187 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
103029187 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103029187 (polr2a)
03400 DNA repair and recombination proteins [BR:
amex03400
]
103029187 (polr2a)
Enzymes [BR:
amex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103029187 (polr2a)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103029187 (polr2a)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103029187 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
103029187
NCBI-ProteinID:
XP_007230809
Ensembl:
ENSAMXG00000020046
UniProt:
A0A8B9KF64
A0A3B1J9R7
LinkDB
All DBs
Position
15:complement(43695738..43722195)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPTSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDAN
NPKIKDILSKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPENDEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIHKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESIMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSNKAFEKKFKFEYTNERALRRTLQEDVLKDVMTNAHVQSSLEREFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSKQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFEWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgcccaccagcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcactgaagggggaatcaag
taccctgaaaccacagagggtggacgtccaaagctgggaggtctcatggacccccggcag
ggcgtcatcgagcggtcgggcaggtgccagacgtgtgcaggtaacatgactgaatgcccc
ggccacttcggacacatcgaactggcaaagccagtctttcatgtcggcttcgtaacaaag
atcatgaaagttctgcgctgcgtctgtttcttctgctccaaactgctggtggatgcgaat
aacccaaagatcaaagacatcctgtcgaagtcgaaggggcagccgaggaagcgtctgact
cacgtgtacgacctctgtaaaggcaagaacatctgcgagggaggagaggagatggacaac
aagttcggtgttgagcagccggagaacgacgaggacctcaccaaggagaagggtcacggt
ggctgtgggcggtaccagcctcgtatccggcgctctggtctggagctgtacgccgagtgg
aagcacgttaatgaagattcccaggagaagaagatcctcctcagccccgaacgcgtccac
gagattttcaaacgcatctctgacgaggaggacctcatcctgggcatggaccccaaatac
gctcggccggagtggatgatcgtcactgtgctgcctgtgccccccctcgctgtccgacct
gctgtggtcatgcagggctctgctagaaaccaggatgacttgacgcacaagctagcggac
atcgtcaaaattaataaccagctcagacggaatgagcagagcggagctgctgctcacgtt
atagctgaggacgtcaagcttctgcagttccatgtggccaccatggtggacaacgagctg
cctggcttacctagagccatgcaaaaatcagggcgtccactcaaatccatcaagcagagg
ctgaagggtaaagaaggcagagtgcgaggtaacttgatgggaaaacgtgtggacttttct
gcacgaactgtcatcacgcccgaccccaacctgcagatcgaccaggtgggcgtccctcgc
tccatcgctgccaacatgaccttccctgagatcgtcacaccttttaatatcgacagactc
caggaacttgtgaggagaggtaacagtcagtatccaggagccaaatacatcatccgtgat
aatggagaccgaattgaccttcgattccaccccaaaccaagcgaccttcaccttcagatt
ggatataaggtggaaaggcatatgtgtgacggtgatatcgtcatcttcaacagacagccc
accctgcacaaaatgtctatgatgggtcacagggtgcgaatcctgccgtggtctacattc
cgactcaacctcagtgtcacaaccccctacaatgctgactttgatggtgatgagatgaac
ctgcacttgccccagtcgctggagacccgtgctgagatccaggagctggctatggtgcct
cgtatgatcgtcacaccccagtccaacagaccagtcatgggtattgtgcaggacactctc
accgcggtccgcaagttcacaaagagagacgtcttcttagagaggggggaagtgatgaat
ctcctgatgttcctctccacctgggacggaaaagtgccacaaccagccatccataagcct
cggccgctgtggactggcaagcagatcttcagcttgatcatcccaggccatatcaacgtc
atccgaacgcacagcacacatccggacgatgaggacagcggcccgtacaagcacatctct
ccaggagacaccaaggtgattgtggagaatggagagctgatcatggggatcctctgtaag
aagtcactgggtacttctgctggatcccttgtccacatctcttacctggagatgggccat
gacatcacccgtctgttctactccaacattcagactgtcgtcaacaactggttgctgatt
gagggtcactccattggtattggtgactccattgctgatgcaaagacatatcttgacatt
cagaacactatcaaaaaggccaagcaggatgtgatagaggtcattgagaaagcccacaac
aatgaactggagcccactccaggtaacaccctgagacagacctttgagaaccaggtgaat
cgtattctgaacgacgctcgagacaaaactggatcttctgcacagaagtccctgtccgag
tacaacaacttcaaatccatggtggtggctggatccaaaggatctaaaattaacatctct
caggttattgccgtggtggggcagcagaacgttgagggtaagcgtatccctttcggcttt
aagcaccggactcttcctcacttcatcaaagacgactacggtcctgagagcagagggttt
gtggagaactcttacctggccggactcacacctactgagtttttcttccacgccatggga
ggaagagagggtctcattgacacagctgtgaaaactgctgagacaggttacattcagcgc
cgtctgatcaaatctatggagtccatcatggtgaagtacgacgccacagtgagaaactcc
attaaccaggtggtgcagctgagatacggagaggacgggctggcgggagaggctgtggaa
ttccagaacatggcaaccctcaaaccctcaaacaaagccttcgagaagaagttcaagttt
gaatacaccaacgagcgagctctgcggcgcaccctgcaggaggacgtgctgaaggacgtg
atgaccaatgcacacgtgcagagttcgctggagagggagtttgagaaaatgagggaagac
cgagagattttgagagccattttcccaactggagacagcaaggtggtgctgccctgtaat
ctggccagaatgatctggaacgcccaaaagatcttccgcataaaccccagaactccaact
gatctcaaccctttgagggtagtggaaggtgtacaggagctgagtaagaagttggtgatt
gtgaacggtgatgacccgttgagtaagcaggcccagcagaacgccacgctgctctttaac
atccacctgcgctccacactctgctcccgacgcatgactgaggagttccgcctcagcaca
gaggccttcgagtggctgctgggagagatcgaggccaaattcaaccagtctatcgctcac
ccaggagagatggtgggcgccctggctgctcagtctctcggagaacccgccacacagatg
accctgaacaccttccactacgccggtgtgtccgccaagaacgtcacgctgggtgtacct
cgactcaaggagctgatcaacatctccaaacgccccaaaactccttccctcaccgtgttc
ctgctgggccaggcggctcgcgacgccgagcgagccaaagacatcctgtgtcgcctggag
cacacaaccctgcgcaaggtcaccgccaacaccgccatctactacgaccccaacccgcag
aacaccgtggtggcagaggatcaggagtgggtgaacgtttactatgagatgcccgacttc
gacgtgacccgaatctccccctggctgctgcgtatcgagctggaccgcaaacacatgacc
gaccgcaagctgaccatggagcagatcgccgagaagatcaatgcaggattcggtgacgac
ctgaactgtatcttcaatgacgataacgctgagaaactggtgctgcgaatcagaatcatg
aacagtgatgaaaacaagttccaggaggatgaggaggtggtggataagatggacgacgac
gtgtttttgagatgcattgagtcaaacatgctgacggacatgactctacagggcattgaa
caaatcagcaaggtgtacatgcatcttcctcaaaccgacaacaagaaaaagatcataatc
acggaggacggagagtttaaagccctgcaggagtggattctggagacggacggcgtcagt
ctcatgagggtcctcagcgaaaaggacgtggaccccgtcagaaccacatccaacgacatc
gtggagatctttactgtgctgggtatcgaggcggtgcgcaaggctctggagagagagttg
taccatgtgatctcctttgacggttcatatgtcaactaccgtcaccttgccctgctttgt
gacacgatgacctgcagaggtcacttgatggccatcactcgccacggtatcaacagacaa
gacacaggaccgctcatgaagtgctcttttgaagagacggtggatgtgttgatggaagcc
tcgtcccatggcgagtgtgatccaatgaagggagtgtctgaaaacatcatgttgggtcag
ttggctcctgctggcaccggctgttttgacctgctgctggatgcagagaaatgcaaatac
ggcatggagattcccaccaacatccctggcatcagtgtggctggaccaaccggaatgttc
ttcggctccgcccccagcccaatgagtggcatgtctccggccatgaccccctggaacacc
ggagctaccccagcttacggtgcctggtcccccagcgtgggcagtggaatgactcctgga
gctgcaggcttttcacccagcgctgcttccgatgccagtggcttctctccaggctactct
cctgcctggtctcctacccctggctctcctgggtctcctggaccagccagcccttacatt
ccctctccaggtggtgccatgtctccaaattactcgcctacatctccagcttatgagcca
cgctcccctggaggctacaccccccagagccccggctattccccaacatctccatcctat
tctccaacctctccttcatactctccaaccagccccaactacagcccaacgtctccatcc
tattctcctacttcaccttcatactccccgacttctccatcttactccccgacgtctcca
agctattcaccgacctcaccttcctattctccgacgtctccatcttattctccaacttct
ccgagctattcgccgacttcgccgagctacagcccgacttctcccagttatagcccgacg
tctccgagctacagccctacttcaccttcttattccccgacttcaccttcttattcaccg
acttctccatcctattcgccgacttctccatcctattctcccacctctccctcttactcg
ccgacgtcaccgagctacagcccgacttcgcccaactacaccccgacctcgcccagttat
tccccaacgtctccatcgtacagcccgacttcgccttcctactcgcccacgtcaccaaac
tacacacccaccagccccaactattctccaacctctccatcctactccccgacctctccg
tcctactctccatccagcccacgctacacccctcaatcgcccacctacaccccaagctcg
ccctcctacagcccgagctcgccgtcgtactccccaacgtctccaaagtacacgcccacc
tctccgtcctacagccccagctctccggagtacacgcccacttcgcccaagtattcacca
acttcgcccaagtattcaccgacttcgcccaaatacagcccaacctctccaacgtactcc
ccaactacacccaagtacagcccaacttctccaacctattctccaacttctccaacctac
acgcccaccagccccaaatactcgcccacctctccaacgtactcgcccacttcgcctaaa
tactcgcctacgtcgcccacctactcaccgaccagccctaaaggctccacctacagcccc
acctcacctggatacagccccacctctccaacctacagcccggccatcagccctgatgac
agcgacgaggagaacaactga
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integrated database retrieval system
